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Lag0032317 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032317
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr11:30344513..30348736
RNA-Seq ExpressionLag0032317
SyntenyLag0032317
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026295.1 putative Gag-pol protein [Cucumis melo var. makuwa]3.2e-4293.62Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDKGYIRPSVS WGAPVLFVKKK+GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG  +FSKIDLRSGYHQLKVRESDI KTTFRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-4294.68Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDK YIRPSVS WGAPVLFVKKK GTLRLCIDY+QLNKV IRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.9e-4393.62Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDKGYIRPSVSLWGAPVLFVKKK+GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG +VFSKIDLRSGYHQLKVR+S+IPKT FRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.9e-4393.62Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDKGYIRPSVSLWGAPVLFVKKK+GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG +VFSKIDLRSGYHQLKVR+S+IPKT FRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]1.8e-4294.68Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDKGYIR SVS WGAPVLFVKKK+GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG VVFSKIDLRSGYHQLKVRESDIPKT FRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

TrEMBL top hitse value%identityAlignment
A0A5A7SPH3 Putative Gag-pol protein1.5e-4293.62Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDKGYIRPSVS WGAPVLFVKKK+GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG  +FSKIDLRSGYHQLKVRESDI KTTFRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

A0A5A7T7M6 Reverse transcriptase2.4e-4393.62Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDKGYIRPSVSLWGAPVLFVKKK+GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG +VFSKIDLRSGYHQLKVR+S+IPKT FRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

A0A5D3BTP3 Reverse transcriptase2.4e-4393.62Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDKGYIRPSVSLWGAPVLFVKKK+GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG +VFSKIDLRSGYHQLKVR+S+IPKT FRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

A0A5D3BV68 Reverse transcriptase2.0e-4294.68Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDK YIRPSVS WGAPVLFVKKK GTLRLCIDY+QLNKV IRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

A0A5D3CSJ5 Putative polyprotein9.0e-4394.68Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        QLQELVDKGYIR SVS WGAPVLFVKKK+GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG VVFSKIDLRSGYHQLKVRESDIPKT FRT
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.2e-1743.01Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFR
        ++ + +  G IR S ++   PV+FV KK GTLR+ +DY+ LNK    N YPLP I+ L  +++G  +F+K+DL+S YH ++VR+ D  K  FR
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFR

P0CT41 Transposon Tf2-12 polyprotein6.2e-1743.01Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFR
        ++ + +  G IR S ++   PV+FV KK GTLR+ +DY+ LNK    N YPLP I+ L  +++G  +F+K+DL+S YH ++VR+ D  K  FR
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.0e-1948.39Show/hide
Query:  LQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        +Q+L+D  +I PS S   +PV+ V KK+GT RLC+DYR LNK TI + +PLPRID+L  ++    +F+ +DL SGYHQ+ +   D  KT F T
Subjt:  LQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.0e-1948.39Show/hide
Query:  LQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT
        +Q+L+D  +I PS S   +PV+ V KK+GT RLC+DYR LNK TI + +PLPRID+L  ++    +F+ +DL SGYHQ+ +   D  KT F T
Subjt:  LQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRT

Q9UR07 Transposon Tf2-11 polyprotein6.2e-1743.01Show/hide
Query:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFR
        ++ + +  G IR S ++   PV+FV KK GTLR+ +DY+ LNK    N YPLP I+ L  +++G  +F+K+DL+S YH ++VR+ D  K  FR
Subjt:  QLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAATGCCATCATCAGGTTGTAGAACAACCCTCCCACTACATCGAGACACTCTCAACTCTTGAGATAGATGTAACGACCCTCCCACTACACCAGTTACAAGA
ACTAGTTGACAAGGGATACATCAGGCCTAGTGTATCACTTTGGGGAGCTCCAGTGTTATTCGTGAAGAAGAAAAATGGTACCCTAAGATTATGCATTGATTACAGACAGT
TAAACAAGGTCACGATACGTAACAAGTATCCTCTACCACGCATTGATGACTTGTTTGACCAGTTAAGGGGAGTAGTAGTGTTCTCTAAGATTGATCTGAGGTCAGGATAC
CACCAGTTAAAGGTTAGGGAATCAGATATTCCTAAGACGACATTCAGGACGACATTACCCTCCCATGTAATGGTCAGATCTGGCGAGACGACCCACAGCCGGCAACCCAA
CGTCGCCACTCCTCTCTCTCTAACCCATTACTCTCTCTCCCTCATTTCAGATCTGACCCAACCCATCAAACCCAGCCTTCAGCCAGCATCTTCCTCGCTTCTAGGGTTCG
TGCCGCTTCCTCTGCAACAATCAAACCCAGCACCTCAGCCTTCAGCCGCTTCATACGCTCTGATAAAGCCCGCAAATATGCAACATCCATCTCAAGGGGCGGTGGTTTGC
GGCTATTTGGGTTGCCCGGATCTGGGTTCGTGGCCGATTGAAGAGGTTTCAAAGTTGTTCGAGGAAAGGGCGACATGTGCGGTGGAGGTGAAGGAAGCGTTCGATGTCAA
TGGCGATGGGTTCATTGAAGAGTTACAGAGATTTGTGTGCATTTGGGTTGAAGGAGAAACGTTTGATGTGTTCGTTGAAGAGTTTGTTGAGAGTGATGAGCTTATTGGGG
TTGAAGGGGAAGGGATTGGAAATTGCATGAGGATGATTGAGAAGTTCGATGAGAATAGAGATGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTCAATGCCATCATCAGGTTGTAGAACAACCCTCCCACTACATCGAGACACTCTCAACTCTTGAGATAGATGTAACGACCCTCCCACTACACCAGTTACAAGA
ACTAGTTGACAAGGGATACATCAGGCCTAGTGTATCACTTTGGGGAGCTCCAGTGTTATTCGTGAAGAAGAAAAATGGTACCCTAAGATTATGCATTGATTACAGACAGT
TAAACAAGGTCACGATACGTAACAAGTATCCTCTACCACGCATTGATGACTTGTTTGACCAGTTAAGGGGAGTAGTAGTGTTCTCTAAGATTGATCTGAGGTCAGGATAC
CACCAGTTAAAGGTTAGGGAATCAGATATTCCTAAGACGACATTCAGGACGACATTACCCTCCCATGTAATGGTCAGATCTGGCGAGACGACCCACAGCCGGCAACCCAA
CGTCGCCACTCCTCTCTCTCTAACCCATTACTCTCTCTCCCTCATTTCAGATCTGACCCAACCCATCAAACCCAGCCTTCAGCCAGCATCTTCCTCGCTTCTAGGGTTCG
TGCCGCTTCCTCTGCAACAATCAAACCCAGCACCTCAGCCTTCAGCCGCTTCATACGCTCTGATAAAGCCCGCAAATATGCAACATCCATCTCAAGGGGCGGTGGTTTGC
GGCTATTTGGGTTGCCCGGATCTGGGTTCGTGGCCGATTGAAGAGGTTTCAAAGTTGTTCGAGGAAAGGGCGACATGTGCGGTGGAGGTGAAGGAAGCGTTCGATGTCAA
TGGCGATGGGTTCATTGAAGAGTTACAGAGATTTGTGTGCATTTGGGTTGAAGGAGAAACGTTTGATGTGTTCGTTGAAGAGTTTGTTGAGAGTGATGAGCTTATTGGGG
TTGAAGGGGAAGGGATTGGAAATTGCATGAGGATGATTGAGAAGTTCGATGAGAATAGAGATGGGTGA
Protein sequenceShow/hide protein sequence
MDPQCHHQVVEQPSHYIETLSTLEIDVTTLPLHQLQELVDKGYIRPSVSLWGAPVLFVKKKNGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGY
HQLKVRESDIPKTTFRTTLPSHVMVRSGETTHSRQPNVATPLSLTHYSLSLISDLTQPIKPSLQPASSSLLGFVPLPLQQSNPAPQPSAASYALIKPANMQHPSQGAVVC
GYLGCPDLGSWPIEEVSKLFEERATCAVEVKEAFDVNGDGFIEELQRFVCIWVEGETFDVFVEEFVESDELIGVEGEGIGNCMRMIEKFDENRDG