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Lag0032318 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032318
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontranscription initiation factor TFIID subunit 5-like
Genome locationchr11:30351183..30352462
RNA-Seq ExpressionLag0032318
SyntenyLag0032318
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006413 - translational initiation (biological process)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domainsIPR037783 - Transcription initiation factor TFIID subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2080284.1 hypothetical protein ES319_A05G060600v1 [Gossypium barbadense]9.0e-2058Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK      +   + L ++   ++     + S ++++LG   G
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG

KAG4197962.1 hypothetical protein ERO13_A05G058900v2 [Gossypium hirsutum]6.9e-2088.33Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK

PPD66366.1 hypothetical protein GOBAR_DD36751 [Gossypium barbadense]6.9e-2088.33Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK

PPD77731.1 hypothetical protein GOBAR_DD25338 [Gossypium barbadense]5.3e-2081.16Show/hide
Query:  LGIINELPSSTEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        LG++  LP STEVEQSIL+DLRN VQLSSVALPSV+FYTF+NTHN LNCSS+S+DG+LVAGGFSDSSLK
Subjt:  LGIINELPSSTEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK

XP_016750426.2 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5 [Gossypium hirsutum]6.9e-2088.33Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK

TrEMBL top hitse value%identityAlignment
A0A1U8PGT6 transcription initiation factor TFIID subunit 5-like4.4e-2058Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK      +   + L ++   ++     + S ++++LG   G
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG

A0A2P5XI12 WD_REPEATS_REGION domain-containing protein4.4e-2058Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK      +   + L ++   ++     + S ++++LG   G
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG

A0A5D2GBZ6 WD_REPEATS_REGION domain-containing protein4.4e-2058Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK      +   + L ++   ++     + S ++++LG   G
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG

A0A5D2QAY1 WD_REPEATS_REGION domain-containing protein4.4e-2058Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK      +   + L ++   ++     + S ++++LG   G
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG

A0A5D2QBB5 WD_REPEATS_REGION domain-containing protein4.4e-2058Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG
        STEVEQSIL+DLRNCVQLSSVALPSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSSLK      +   + L ++   ++     + S ++++LG   G
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGRG

SwissProt top hitse value%identityAlignment
P38129 Transcription initiation factor TFIID subunit 54.2e-0437.68Show/hide
Query:  LPSSTEVEQSI----LKDLRNCVQLSS--VALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        LP  T ++  +    +K+ R+ ++L +  +ALPSV  YTF NT+ D++C   S D  + A GF DS +K
Subjt:  LPSSTEVEQSI----LKDLRNCVQLSS--VALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK

Q15542 Transcription initiation factor TFIID subunit 52.5e-0435.38Show/hide
Query:  ELPSSTEVEQSI-LKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        EL  S ++++ + +K+    V+L    LPS+ FYTF+N +  L    ++ D +L+AGGF+DS+++
Subjt:  ELPSSTEVEQSI-LKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK

Q6S7B0 Transcription initiation factor TFIID subunit 51.1e-2081.67Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        ST+VEQSIL+DLRN VQLSSVA+PSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSS+K
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK

Q8C092 Transcription initiation factor TFIID subunit 52.5e-0435.38Show/hide
Query:  ELPSSTEVEQSI-LKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        EL  S ++++ + +K+    V+L    LPS+ FYTF+N +  L    ++ D +L+AGGF+DS+++
Subjt:  ELPSSTEVEQSI-LKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK

Arabidopsis top hitse value%identityAlignment
AT5G25150.1 TBP-associated factor 57.9e-2281.67Show/hide
Query:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK
        ST+VEQSIL+DLRN VQLSSVA+PSV+FYTF+NTHN LNCSS+S DG+LVAGGFSDSS+K
Subjt:  STEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACTTGGGATTATCAACGAACTTCCAAGTTCAACGGAGGTGGAACAATCTATTCTTAAAGACTTGAGAAATTGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCGGT
CAACTTTTATACCTTCATTAATACACACAATGATTTAAACTGTTCGTCAATGTCACGTGATGGAGCTTTAGTTGCTGGTGGATTTTCAGACTCTTCTTTGAAGGAAGGTA
TAGCACGAACCATTGTATCATTTTCACATTTGCGCAAAGAATTGTCTCTTGCAAGTTTCACTAAATTTACTGAAGAATCACAAGCTGATAAGCTGCTGGGCGGTGGAAGA
GGTGGAGTGCAGCTGCCAGGTAGTTGGACACTTGATTGGATTCTGGAACTAGAAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATACTTGGGATTATCAACGAACTTCCAAGTTCAACGGAGGTGGAACAATCTATTCTTAAAGACTTGAGAAATTGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCGGT
CAACTTTTATACCTTCATTAATACACACAATGATTTAAACTGTTCGTCAATGTCACGTGATGGAGCTTTAGTTGCTGGTGGATTTTCAGACTCTTCTTTGAAGGAAGGTA
TAGCACGAACCATTGTATCATTTTCACATTTGCGCAAAGAATTGTCTCTTGCAAGTTTCACTAAATTTACTGAAGAATCACAAGCTGATAAGCTGCTGGGCGGTGGAAGA
GGTGGAGTGCAGCTGCCAGGTAGTTGGACACTTGATTGGATTCTGGAACTAGAAGGATAG
Protein sequenceShow/hide protein sequence
MILGIINELPSSTEVEQSILKDLRNCVQLSSVALPSVNFYTFINTHNDLNCSSMSRDGALVAGGFSDSSLKEGIARTIVSFSHLRKELSLASFTKFTEESQADKLLGGGR
GGVQLPGSWTLDWILELEG