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Lag0032337 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032337
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr11:30786382..30788165
RNA-Seq ExpressionLag0032337
SyntenyLag0032337
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025358.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-0859.62Show/hide
Query:  IAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
        +AMNDVDKDQW+K++DLEMESMYFN VWELVD P   G++     ++ KR++
Subjt:  IAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
KAA0047674.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-0860.78Show/hide
Query:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
        AMNDVDKDQW+K++DLEMESMYFN VWELVD P   G++     ++ KR++
Subjt:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
KAA0052796.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-0862.75Show/hide
Query:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
        AMNDVDKDQW+K++DLEMESMYFN VWELVD P   GL+     ++ KR++
Subjt:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
TYK04171.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-0861.54Show/hide
Query:  IAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
        IAMNDVDKDQW+K++DLEMESMYFN VWELVD P   G++     ++ KR++
Subjt:  IAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
TYK04889.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]2.7e-0860Show/hide
Query:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRKMESP
        AMNDVDKDQW+K++DLEMESMYFN VWELVD P     R     +  KR  +E P
Subjt:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRKMESP
TrEMBL top hitse value%identityAlignment
A0A5A7SGT6 Gag/pol protein7.5e-0959.62Show/hide
Query:  IAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
        +AMNDVDKDQW+K++DLEMESMYFN VWELVD P   G++     ++ KR++
Subjt:  IAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
A0A5A7TXG9 Gag/pol protein1.7e-0860.78Show/hide
Query:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
        AMNDVDKDQW+K++DLEMESMYFN VWELVD P   G++     ++ KR++
Subjt:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
A0A5A7UF22 Gag/pol protein9.8e-0962.75Show/hide
Query:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
        AMNDVDKDQW+K++DLEMESMYFN VWELVD P   GL+     ++ KR++
Subjt:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
A0A5D3BWT8 Gag/pol protein7.5e-0961.54Show/hide
Query:  IAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
        IAMNDVDKDQW+K++DLEMESMYFN VWELVD P   G++     ++ KR++
Subjt:  IAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRK
A0A5D3C3C9 Retrovirus-related pol polyprotein from transposon tnt 1-941.3e-0860Show/hide
Query:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRKMESP
        AMNDVDKDQW+K++DLEMESMYFN VWELVD P     R     +  KR  +E P
Subjt:  AMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAADFVPKRRKMESP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACCAATCACACCCCAAGGTGATTGGTGGCGACTCCAAACCTCTCCTCTCGAAAGAGACCCTTAGGAAAGGACGTCGGCCGCTTCGCGTCGCGATGACGTTGCG
ACAAAGACAACAGTGGCAACTGGAGAAAAGGACAACGACGATTTGCGTAGATGCGATTGCGAGTGGAGAAGGCTCAACACATTTATACATAGCAATGAATGATGTGGATA
AAGATCAATGGATCAAATCATTGGACCTTGAGATGGAGTCTATGTACTTCAATCAAGTTTGGGAACTTGTAGATCCACCTGTCGCTACGGGTTTGCGACGCGGAGCGGCC
GACTTTGTTCCCAAAAGAAGGAAAATGGAGTCGCCACCAGTCTTGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACCAATCACACCCCAAGGTGATTGGTGGCGACTCCAAACCTCTCCTCTCGAAAGAGACCCTTAGGAAAGGACGTCGGCCGCTTCGCGTCGCGATGACGTTGCG
ACAAAGACAACAGTGGCAACTGGAGAAAAGGACAACGACGATTTGCGTAGATGCGATTGCGAGTGGAGAAGGCTCAACACATTTATACATAGCAATGAATGATGTGGATA
AAGATCAATGGATCAAATCATTGGACCTTGAGATGGAGTCTATGTACTTCAATCAAGTTTGGGAACTTGTAGATCCACCTGTCGCTACGGGTTTGCGACGCGGAGCGGCC
GACTTTGTTCCCAAAAGAAGGAAAATGGAGTCGCCACCAGTCTTGATTTAG
Protein sequenceShow/hide protein sequence
MGDQSHPKVIGGDSKPLLSKETLRKGRRPLRVAMTLRQRQQWQLEKRTTTICVDAIASGEGSTHLYIAMNDVDKDQWIKSLDLEMESMYFNQVWELVDPPVATGLRRGAA
DFVPKRRKMESPPVLI