; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032342 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032342
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionU6 snRNA phosphodiesterase
Genome locationchr11:30893965..30894548
RNA-Seq ExpressionLag0032342
SyntenyLag0032342
Gene Ontology termsGO:0034477 - U6 snRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
InterPro domainsIPR027521 - U6 snRNA phosphodiesterase Usb1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055091.1 U6 snRNA phosphodiesterase [Cucumis melo var. makuwa]1.1e-1663.22Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASP--------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDALRASYGGSSSDEE + +SPS +S S         S LPLPPPPLSLL+ PNS   L D P    +RVRSFPHV+GN+ALH+YIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASP--------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

XP_008467330.1 PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]1.1e-1663.22Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASP--------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDALRASYGGSSSDEE + +SPS +S S         S LPLPPPPLSLL+ PNS   L D P    +RVRSFPHV+GN+ALH+YIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASP--------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

XP_022155865.1 U6 snRNA phosphodiesterase [Momordica charantia]3.9e-1767.9Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASPSVLP--LPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDAL+ASY GSSSDEE +I+S +PS  SP   P  LPPPPLSLL  PNSIS L D P   P+R RSFPHVEGN+ALH+YIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASPSVLP--LPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

XP_038875354.1 U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]3.9e-1764.04Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASPSV----------LPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDALRASYGGSSSDEEA+ +SPS +S S S           LPLPPP  SLLH PNS S L D P    +RVRSFPHV+GN+ALHLYIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASPSV----------LPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

XP_038875355.1 U6 snRNA phosphodiesterase isoform X2 [Benincasa hispida]3.9e-1764.04Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASPSV----------LPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDALRASYGGSSSDEEA+ +SPS +S S S           LPLPPP  SLLH PNS S L D P    +RVRSFPHV+GN+ALHLYIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASPSV----------LPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

TrEMBL top hitse value%identityAlignment
A0A0A0KPH5 U6 snRNA phosphodiesterase3.6e-1662.07Show/hide
Query:  MDALRASYGGSSSDEEAEILS-PSPSSASP-------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDALRASYGGSSSDEE + +S PS S+++P       + LPLPPPPLSLL+ PNS   L D P    +RVRSFPHV+GN+ALH+YIP
Subjt:  MDALRASYGGSSSDEEAEILS-PSPSSASP-------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

A0A1S3CTB0 U6 snRNA phosphodiesterase5.5e-1763.22Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASP--------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDALRASYGGSSSDEE + +SPS +S S         S LPLPPPPLSLL+ PNS   L D P    +RVRSFPHV+GN+ALH+YIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASP--------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

A0A5A7UND6 U6 snRNA phosphodiesterase5.5e-1763.22Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASP--------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDALRASYGGSSSDEE + +SPS +S S         S LPLPPPPLSLL+ PNS   L D P    +RVRSFPHV+GN+ALH+YIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASP--------SVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

A0A6J1DNL4 U6 snRNA phosphodiesterase1.9e-1767.9Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASPSVLP--LPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        MDAL+ASY GSSSDEE +I+S +PS  SP   P  LPPPPLSLL  PNSIS L D P   P+R RSFPHVEGN+ALH+YIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASPSVLP--LPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

A0A6J1EQH7 U6 snRNA phosphodiesterase9.4e-1761.8Show/hide
Query:  MDALRASYGGSSSDEEAEILSPSPSSASPSV----------LPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        M+AL ASYGGSSSDE+ + +SPS +SAS S+          LPLPPPPLSLL  PNS S L D P    +RVRSFPHV+GN+ALHLYIP
Subjt:  MDALRASYGGSSSDEEAEILSPSPSSASPSV----------LPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G51170.1 unknown protein2.0e-1148.19Show/hide
Query:  MDALRASYGGSSSDEEAEILSP----SPSSASPSVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        M+ALRASYG SSSD + + LSP    + +S     + LPPPPL+LL    S   L         RVR+FPHV+GN+ALH+Y+P
Subjt:  MDALRASYGGSSSDEEAEILSP----SPSSASPSVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP

AT5G51170.2 unknown protein2.0e-1148.19Show/hide
Query:  MDALRASYGGSSSDEEAEILSP----SPSSASPSVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP
        M+ALRASYG SSSD + + LSP    + +S     + LPPPPL+LL    S   L         RVR+FPHV+GN+ALH+Y+P
Subjt:  MDALRASYGGSSSDEEAEILSP----SPSSASPSVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTCTAAGGGCGTCATATGGAGGAAGCTCGTCGGATGAAGAAGCGGAAATACTCTCTCCTTCCCCTTCATCAGCTTCACCTTCAGTTTTACCTCTGCCTCCACC
GCCTCTCTCACTTCTCCATCCTCCAAATTCCATATCCGATTTGAGTGATTCCCCATTCACTCTGCCCAGTAGAGTTCGGAGCTTCCCTCATGTTGAAGGAAACTTTGCCC
TACACCTCTATATCCCAGAGGAGGAGGTTCTTTCAGTCCAGATTGGAATCAATGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTCTAAGGGCGTCATATGGAGGAAGCTCGTCGGATGAAGAAGCGGAAATACTCTCTCCTTCCCCTTCATCAGCTTCACCTTCAGTTTTACCTCTGCCTCCACC
GCCTCTCTCACTTCTCCATCCTCCAAATTCCATATCCGATTTGAGTGATTCCCCATTCACTCTGCCCAGTAGAGTTCGGAGCTTCCCTCATGTTGAAGGAAACTTTGCCC
TACACCTCTATATCCCAGAGGAGGAGGTTCTTTCAGTCCAGATTGGAATCAATGTCTAA
Protein sequenceShow/hide protein sequence
MDALRASYGGSSSDEEAEILSPSPSSASPSVLPLPPPPLSLLHPPNSISDLSDSPFTLPSRVRSFPHVEGNFALHLYIPEEEVLSVQIGINV