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Lag0032347 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032347
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr11:31004623..31006244
RNA-Seq ExpressionLag0032347
SyntenyLag0032347
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041764.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]3.7e-1050Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YG+++T N TL+QQ +ER+ AL ALKE L +AQE++KK+VD+ R+ VEF I D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
KAA0049630.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-0947.5Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YGE++T N TL+QQ  +R+  L ALKE L +AQER+KK+ D+ R+ VEF   D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-0947.5Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YGE++T N TL+QQ  +R+  L ALKE L +AQER+KK+ D+ R+ VEF   D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-0947.5Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YGE++T N TL+QQ  +R+  L ALKE L +AQER+KK+ D+ R+ VEF   D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-0947.5Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YGE++T N TL+QQ  +R+  L ALKE L +AQER+KK+ D+ R+ VEF   D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
TrEMBL top hitse value%identityAlignment
A0A5A7TEA3 Putative retroelement pol polyprotein1.8e-1050Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YG+++T N TL+QQ +ER+ AL ALKE L +AQE++KK+VD+ R+ VEF I D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
A0A5A7U2S1 Ty3/gypsy retrotransposon protein6.8e-1047.5Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YGE++T N TL+QQ  +R+  L ALKE L +AQER+KK+ D+ R+ VEF   D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
A0A5A7U6J3 Ty3/gypsy retrotransposon protein6.8e-1047.5Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YGE++T N TL+QQ  +R+  L ALKE L +AQER+KK+ D+ R+ VEF   D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
A0A5D3CXB1 Ty3/gypsy retrotransposon protein6.8e-1047.5Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YGE++T N TL+QQ  +R+  L ALKE L +AQER+KK+ D+ R+ VEF   D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
A0A5D3DI73 Ty3/gypsy retrotransposon protein6.8e-1047.5Show/hide
Query:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
        Y+ T H S+  T F  +YG+ P  L+ YGE++T N TL+QQ  +R+  L ALKE L +AQER+KK+ D+ R+ VEF   D
Subjt:  YSLTSH-SLNTTTFHVIYGQAPSSLLSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTGGCAATGAAGAAGTGTGTGGTGCCTGCCACACATATCAACACAACAAATCTCTGGTTGCCTCTCCATCTAGACTCCTACAACCCCTACCCATTTCGAATCAA
ATATGGGAAGATGTATGGATGGACTTTGTTGAGGGATTGCCTCGCTCGATGGGAAATGAAAAGGGTTTTGGTTGTGGTAGACCGCCTTAGCAACCCAAGCAATGGATGCA
GTGGTTATCGTGGACGAACTACTGAGGTGTCTGTGCTTTATAGCCTCACATCACACTCCCTTAATACTACAACGTTTCATGTGATTTATGGTCAAGCACCATCGTCGTTA
TTATCATATGGAGAATTGAAAACTTCCAACGTTACTCTTGAGCAGCAATTTGAGGAACGAAACGAAGCCCTTAATGCACTAAAGGAGCAGTTGAATATCGCCCAAGAAAG
AATTAAAAAATATGTTGATATCAACCGTCAAAAAGTTGAATTTGTCATCAAAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTGGCAATGAAGAAGTGTGTGGTGCCTGCCACACATATCAACACAACAAATCTCTGGTTGCCTCTCCATCTAGACTCCTACAACCCCTACCCATTTCGAATCAA
ATATGGGAAGATGTATGGATGGACTTTGTTGAGGGATTGCCTCGCTCGATGGGAAATGAAAAGGGTTTTGGTTGTGGTAGACCGCCTTAGCAACCCAAGCAATGGATGCA
GTGGTTATCGTGGACGAACTACTGAGGTGTCTGTGCTTTATAGCCTCACATCACACTCCCTTAATACTACAACGTTTCATGTGATTTATGGTCAAGCACCATCGTCGTTA
TTATCATATGGAGAATTGAAAACTTCCAACGTTACTCTTGAGCAGCAATTTGAGGAACGAAACGAAGCCCTTAATGCACTAAAGGAGCAGTTGAATATCGCCCAAGAAAG
AATTAAAAAATATGTTGATATCAACCGTCAAAAAGTTGAATTTGTCATCAAAGACTAG
Protein sequenceShow/hide protein sequence
MKVAMKKCVVPATHINTTNLWLPLHLDSYNPYPFRIKYGKMYGWTLLRDCLARWEMKRVLVVVDRLSNPSNGCSGYRGRTTEVSVLYSLTSHSLNTTTFHVIYGQAPSSL
LSYGELKTSNVTLEQQFEERNEALNALKEQLNIAQERIKKYVDINRQKVEFVIKD