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Lag0032364 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032364
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:31309612..31309989
RNA-Seq ExpressionLag0032364
SyntenyLag0032364
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-0947.78Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KK  +  + +SD+YTGP+TRSRS+GI I+E      VA  I K + ES K  + +K+NPL+++  S S + K    PDVMSVMMAD+
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

KAA0066578.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0948.89Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KKA +K + +SD+Y GP+TRSRS+GI  ++D     VA  I K + ES K  + +K+NPL+++  STS + K    PDVMSVMMAD+
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.1e-0948.89Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KKA +K + +SD+YTGP+TRSRS+GI I+      A+A  I K + ES K  + +K+NPL+    S S +      PDVMSVMMADV
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.1e-0948.89Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KKA +K + +SD+YTGP+TRSRS+GI I+      A+A  I K + ES K  + +K+NPL+    S S +      PDVMSVMMADV
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]3.1e-0948.89Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KKA +K + +SD+YTGP+TRSRS+GI I+      A+A  I K + ES K  + +K+NPL+    S S +      PDVMSVMMADV
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

TrEMBL top hitse value%identityAlignment
A0A5A7VFQ8 Ty3-gypsy retrotransposon protein5.2e-1048.89Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KKA +K + +SD+Y GP+TRSRS+GI  ++D     VA  I K + ES K  + +K+NPL+++  STS + K    PDVMSVMMAD+
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

A0A5D3BDK1 Ty3-gypsy retrotransposon protein1.3e-0844.44Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KKA +  + +SD+YTGP+TR+RS+GI I+E      +A  I K + ES K  + +K+NPL+++  S S + K    PDVMSV+M D+
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.6e-0946.67Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KKA +  + +S++YTGP+TRSRS+GI  ++D     VA  I K + ES K  + +K+NPL+++  S+S + K    PDVMSVMMAD+
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

A0A5D3C3J8 Ty3-gypsy retrotransposon protein5.7e-0946.67Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KKA +  + ++D+YTGP+TRSR +GI I+E      VA  I K + ES K  + +K+NPL+++  S S + K    PDVMSVMMAD+
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

A0A5D3DC86 Ty3-gypsy retrotransposon protein1.2e-0947.78Show/hide
Query:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV
        MA KK  +  + +SD+YTGP+TRSRS+GI I+E      VA  I K + ES K  + +K+NPL+++  S S + K    PDVMSVMMAD+
Subjt:  MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCAAAGAAAGCTCCCACGAAGGTTACCACATCAAGCGACTCTTACACTGGCCCTGTCACTCGTAGTCGCTCCCAAGGAATTGAGATCAAGGAGGATCATACTCC
TCTAGCTGTTGCAAGCAAGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTATTCGAATCTGTCGTTTCAACATCTAAGCAGC
CAAAGGATACGCTAAGTCCTGATGTGATGTCCGTCATGATGGCTGATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCAAAGAAAGCTCCCACGAAGGTTACCACATCAAGCGACTCTTACACTGGCCCTGTCACTCGTAGTCGCTCCCAAGGAATTGAGATCAAGGAGGATCATACTCC
TCTAGCTGTTGCAAGCAAGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTATTCGAATCTGTCGTTTCAACATCTAAGCAGC
CAAAGGATACGCTAAGTCCTGATGTGATGTCCGTCATGATGGCTGATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAATAA
Protein sequenceShow/hide protein sequence
MAPKKAPTKVTTSSDSYTGPVTRSRSQGIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVSTSKQPKDTLSPDVMSVMMADVXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXQ