CuGenDBv2

Gene ID	Lag0032406
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Genome location	chr11:32031103..32031922
RNA-Seq Expression	Lag0032406
Synteny	Lag0032406
Gene Ontology terms	GO:0009451 - RNA modification (biological process) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0003723 - RNA binding (molecular function) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR002885 - Pentatricopeptide repeat IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6603961.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

8.4e-123

83.15

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN V WTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTT+VTTYVQMGKEECG+QAFRK                        RLKWGEQLHA VL VGFLN+LSVANS+MTMYSKCGELASVSKVF
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

KAG7034130.1 putative pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]

8.4e-123

83.15

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN V WTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTT+VTTYVQMGKEECG+QAFRK                        RLKWGEQLHA VL VGFLN+LSVANS+MTMYSKCGELASVSKVF
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

XP_022949984.1 putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucurbita moschata]

1.9e-122

82.78

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTT+VTTYVQMGKEECG+QAFR+                        RLKWGEQLHA VL VGF+N+LSVANS+MTMYSKCGELASVSKVF
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

XP_023544313.1 putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucurbita pepo subsp. pepo]

6.4e-123

83.15

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANS+ATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTTIVTTYVQMGKEECG+QAFR+                        RLKWGEQLHA VL VGFLN+LSVANS+MTMYSKCGELASVSKVF
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

XP_023544314.1 putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 [Cucurbita pepo subsp. pepo]

6.4e-123

83.15

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANS+ATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTTIVTTYVQMGKEECG+QAFR+                        RLKWGEQLHA VL VGFLN+LSVANS+MTMYSKCGELASVSKVF
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DSK9 putative pentatricopeptide repeat-containing protein At3g47840

5.0e-121

82.78

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RNAVTWTAVITGLVR GYNEEGL YFS+MGRSKVEYDS+AYAIALKA+ADSGALNHGRAIHTQTLKKGF+ENSFVANSLA+MYNKCGKLDYGLYMFG
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMRTPDVVSWTTI+T+YVQMG+EE GLQAFR+                         LKWG+QLHARVLCVGFLNSLSVANS+MTMYSKCGELASVSK+F
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        CTM FRDIISWSTIIAA SQA Y +EAF YLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

A0A6J1GEB4 putative pentatricopeptide repeat-containing protein At3g47840 isoform X2

9.1e-123

82.78

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTT+VTTYVQMGKEECG+QAFR+                        RLKWGEQLHA VL VGF+N+LSVANS+MTMYSKCGELASVSKVF
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

A0A6J1GEH8 putative pentatricopeptide repeat-containing protein At3g47840 isoform X1

9.1e-123

82.78

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTT+VTTYVQMGKEECG+QAFR+                        RLKWGEQLHA VL VGF+N+LSVANS+MTMYSKCGELASVSKVF
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

A0A6J1IMM7 putative pentatricopeptide repeat-containing protein At3g47840 isoform X2

7.7e-122

82.42

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTT+VTTYVQMGKEECG+QAFR+                        RLKWGEQLHA VL VGFLN+LSVANS+MTMYSKCGELASVSK+F
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEG KPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

A0A6J1IU19 putative pentatricopeptide repeat-containing protein At3g47840 isoform X1

7.7e-122

82.42

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM G
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
        KMR PDVVSWTT+VTTYVQMGKEECG+QAFR+                        RLKWGEQLHA VL VGFLN+LSVANS+MTMYSKCGELASVSK+F
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
        C+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEG KPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

SwissProt top hits

e value

%identity

Alignment

Q9CAA8 Putative pentatricopeptide repeat-containing protein At1g68930

2.4e-35

30.27

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Query:  RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMR
        +++V+W A+I GL + G  +E +  F EM    ++ D Y +   L A    GA+N G+ IH   ++  F ++ +V ++L  MY KC  L Y   +F +M+
Subjt:  RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMR

Query:  TPDVVSWTTIVTTYVQMGKEECGL-------------------QAFRKC----RLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFCTM
          +VVSWT +V  Y Q G+ E  +                   QA   C     L+ G Q H + +  G ++ ++V+NS++T+Y KCG++   +++F  M
Subjt:  TPDVVSWTTIVTTYVQMGKEECGL-------------------QAFRKC----RLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFCTM

Query:  SFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ
        + RD +SW+ +++AY+Q G   E  +   +M   G KP+   L  V+S C    ++E+G++
Subjt:  SFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ

Q9FXA9 Putative pentatricopeptide repeat-containing protein At1g56570

5.4e-32

Show/hide

Query:  IRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKM
        ++N VTWT +ITG    G    GL  + +M     E   Y   IA++ASA   ++  G+ IH   +K+GF  N  V NS+  +Y +CG L    + F +M
Subjt:  IRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKM

Query:  RTPDVVSWTTIVTTYVQMGKEECGL--QAFRK--------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFC-T
           D+++W T+++   +    E  L  Q F                        L  G+QLH R+   GF  ++ +AN+++ MY+KCG +    +VF   
Subjt:  RTPDVVSWTTIVTTYVQMGKEECGL--QAFRK--------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFC-T

Query:  MSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQG
        +  R+++SW++++  Y   GY  EA E   +M S G +P+     +VLS C    ++E+G
Subjt:  MSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQG

Q9LTV8 Pentatricopeptide repeat-containing protein At3g12770

2.1e-31

29.15

Show/hide

Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        +P      W A+I G  R  + ++ L  +S M  ++V  DS+ +   LKA +    L  GR +H Q  + GFD + FV N L  +Y KC +L     +F 
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPD--VVSWTTIVTTYVQMGKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSK
         +  P+  +VSWT IV+ Y Q G+    L+ F + R                       LK G  +HA V+ +G      +  S+ TMY+KCG++A+   
Subjt:  KMRTPD--VVSWTTIVTTYVQMGKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSK

Query:  VFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHV
        +F  M   ++I W+ +I+ Y++ GY +EA +    M ++  +P+  ++ S +S C  +  LEQ + ++ +V
Subjt:  VFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHV

Q9STF3 Pentatricopeptide repeat-containing protein At3g46790, chloroplastic

8.4e-33

30.22

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Query:  RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKAS-ADSGALNH---GRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMF
        R    W A+   L   G+ EE L  + +M R  VE D + Y   LKA  A    +NH   G+ IH    ++G+  + ++  +L  MY + G +DY  Y+F
Subjt:  RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKAS-ADSGALNH---GRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMF

Query:  GKMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-------------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVS
        G M   +VVSW+ ++  Y + GK    L+ FR+                           L+ G+ +H  +L  G  + L V ++++TMY +CG+L    
Subjt:  GKMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-------------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVS

Query:  KVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQL
        +VF  M  RD++SW+++I++Y   GY K+A +    M + G  P      SVL  C    ++E+GK+L
Subjt:  KVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQL

Q9STS9 Putative pentatricopeptide repeat-containing protein At3g47840

5.2e-67

50.18

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Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RNAVTWTA+ITGLV  G  +EGL YFSEM RS+   D+Y +AIALKA A    + +G+AIHT  + +GF     VANSLATMY +CG++  GL +F 
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
         M   DVVSWT+++  Y ++G+E   ++ F K                        RL WGEQLH  VL +G  +SLSV+NS+M MYS CG L S S +F
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
          M  RDIISWSTII  Y QAG+ +E F+Y S MR  G KP +FALAS+LSV G+MA++E G+Q+HA  L  G
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

Arabidopsis top hits

e value

%identity

Alignment

AT1G56570.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.9e-33

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Query:  IRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKM
        ++N VTWT +ITG    G    GL  + +M     E   Y   IA++ASA   ++  G+ IH   +K+GF  N  V NS+  +Y +CG L    + F +M
Subjt:  IRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKM

Query:  RTPDVVSWTTIVTTYVQMGKEECGL--QAFRK--------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFC-T
           D+++W T+++   +    E  L  Q F                        L  G+QLH R+   GF  ++ +AN+++ MY+KCG +    +VF   
Subjt:  RTPDVVSWTTIVTTYVQMGKEECGL--QAFRK--------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFC-T

Query:  MSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQG
        +  R+++SW++++  Y   GY  EA E   +M S G +P+     +VLS C    ++E+G
Subjt:  MSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQG

AT1G68930.1 pentatricopeptide (PPR) repeat-containing protein

1.7e-36

30.27

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Query:  RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMR
        +++V+W A+I GL + G  +E +  F EM    ++ D Y +   L A    GA+N G+ IH   ++  F ++ +V ++L  MY KC  L Y   +F +M+
Subjt:  RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMR

Query:  TPDVVSWTTIVTTYVQMGKEECGL-------------------QAFRKC----RLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFCTM
          +VVSWT +V  Y Q G+ E  +                   QA   C     L+ G Q H + +  G ++ ++V+NS++T+Y KCG++   +++F  M
Subjt:  TPDVVSWTTIVTTYVQMGKEECGL-------------------QAFRKC----RLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFCTM

Query:  SFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ
        + RD +SW+ +++AY+Q G   E  +   +M   G KP+   L  V+S C    ++E+G++
Subjt:  SFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQ

AT3G12770.1 mitochondrial editing factor 22

1.5e-32

29.15

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Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        +P      W A+I G  R  + ++ L  +S M  ++V  DS+ +   LKA +    L  GR +H Q  + GFD + FV N L  +Y KC +L     +F 
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPD--VVSWTTIVTTYVQMGKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSK
         +  P+  +VSWT IV+ Y Q G+    L+ F + R                       LK G  +HA V+ +G      +  S+ TMY+KCG++A+   
Subjt:  KMRTPD--VVSWTTIVTTYVQMGKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSK

Query:  VFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHV
        +F  M   ++I W+ +I+ Y++ GY +EA +    M ++  +P+  ++ S +S C  +  LEQ + ++ +V
Subjt:  VFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHV

AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein

6.0e-34

30.22

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Query:  RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKAS-ADSGALNH---GRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMF
        R    W A+   L   G+ EE L  + +M R  VE D + Y   LKA  A    +NH   G+ IH    ++G+  + ++  +L  MY + G +DY  Y+F
Subjt:  RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKAS-ADSGALNH---GRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMF

Query:  GKMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-------------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVS
        G M   +VVSW+ ++  Y + GK    L+ FR+                           L+ G+ +H  +L  G  + L V ++++TMY +CG+L    
Subjt:  GKMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-------------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVS

Query:  KVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQL
        +VF  M  RD++SW+++I++Y   GY K+A +    M + G  P      SVL  C    ++E+GK+L
Subjt:  KVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQL

AT3G47840.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.7e-68

50.18

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Query:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG
        MP RNAVTWTA+ITGLV  G  +EGL YFSEM RS+   D+Y +AIALKA A    + +G+AIHT  + +GF     VANSLATMY +CG++  GL +F 
Subjt:  MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFG

Query:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF
         M   DVVSWT+++  Y ++G+E   ++ F K                        RL WGEQLH  VL +G  +SLSV+NS+M MYS CG L S S +F
Subjt:  KMRTPDVVSWTTIVTTYVQMGKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVF

Query:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
          M  RDIISWSTII  Y QAG+ +E F+Y S MR  G KP +FALAS+LSV G+MA++E G+Q+HA  L  G
Subjt:  CTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

Sequences

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CDS sequence

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ATGCCAATAAGAAATGCGGTGACTTGGACGGCAGTTATAACCGGACTTGTTCGTACAGGGTATAACGAGGAGGGGCTGGCTTACTTTTCTGAAATGGGGAGGTCAAAGGT
GGAATATGACTCTTATGCATATGCTATAGCGTTAAAGGCTAGTGCTGATTCGGGTGCACTGAATCATGGAAGAGCAATTCATACACAAACATTGAAGAAAGGTTTCGATG
AGAACTCCTTTGTGGCCAATTCGCTAGCTACCATGTATAACAAATGTGGTAAGCTAGATTATGGTTTGTATATGTTTGGCAAGATGAGGACTCCGGATGTTGTTTCGTGG
ACGACAATTGTAACGACATACGTTCAAATGGGTAAGGAGGAATGTGGGCTTCAAGCATTTAGAAAATGCAGGTTGAAGTGGGGGGAACAACTACATGCTCGTGTTTTATG
TGTGGGGTTTCTGAATTCTTTATCAGTTGCAAACTCAGTCATGACCATGTACTCAAAATGTGGGGAGTTAGCTTCTGTTTCAAAGGTATTTTGTACAATGAGTTTTAGAG
ATATCATTTCATGGAGCACTATAATTGCAGCATATTCTCAAGCAGGTTACGACAAAGAAGCCTTCGAGTACCTATCCCGAATGAGAAGTGAAGGACCAAAACCAAATGAG
TTTGCTCTGGCTAGCGTGTTAAGTGTATGTGGAAGTATGGCGATTCTCGAGCAAGGGAAGCAACTGCATGCTCATGTTCTGTCTGTTGGTTAG

mRNA sequence

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Protein sequence

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MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSW
TTIVTTYVQMGKEECGLQAFRKCRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNE
FALASVLSVCGSMAILEQGKQLHAHVLSVG

Lag0032406 (gene) of Sponge gourd (AG-4) v1 genome