; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032407 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032407
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:32054859..32059575
RNA-Seq ExpressionLag0032407
SyntenyLag0032407
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR040269 - VAN3-binding protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW26208.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.1e-2766.33Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R    + +EKE+MRKV YAS +GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K I+RYLRGTS LKLTFGSGK VLVGYTDSNM    + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

RVW64552.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.0e-2665.31Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R    + +EKE+MR+V YASA+GSLMY M+CTRPDI + VGVV+ F+ N G  HWEA+K I+RY RGTS LKLTFGSGKLVLVGYTDSNMA   + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

RVW68760.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.1e-2765.31Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R      +EKE+MR+V YASA+GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K I+RYLRGTS LKLTFGSGK +LVGYTDS+MA   + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

RVW71160.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.0e-2663.27Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R    + +EKE+MR+V YA A+GSLMY M+CTRPDI + V VVSHF+ N G  HWEA+K I+RYL+GTS LKLTFG GKL+LVGYTDSNMA   + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

RVW85908.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.0e-2665.31Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R      +EKE+MR+V YASA+GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K I+RYLRGTS LKLTFGSGK +LVGYTDS+MA   + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

TrEMBL top hitse value%identityAlignment
A0A438CSN7 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-2766.33Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R    + +EKE+MRKV YAS +GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K I+RYLRGTS LKLTFGSGK VLVGYTDSNM    + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

A0A438FX55 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-2765.31Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R    + +EKE+MR+V YASA+GSLMY M+CTRPDI + VGVV+ F+ N G  HWEA+K I+RY RGTS LKLTFGSGKLVLVGYTDSNMA   + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

A0A438G971 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-2765.31Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R      +EKE+MR+V YASA+GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K I+RYLRGTS LKLTFGSGK +LVGYTDS+MA   + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

A0A438GG43 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-2763.27Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R    + +EKE+MR+V YA A+GSLMY M+CTRPDI + V VVSHF+ N G  HWEA+K I+RYL+GTS LKLTFG GKL+LVGYTDSNMA   + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

A0A438HN89 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-2765.31Show/hide
Query:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        R      +EKE+MR+V YASA+GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K I+RYLRGTS LKLTFGSGK +LVGYTDS+MA   + +R
Subjt:  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.0e-0940Show/hide
Query:  SAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSG---KLVLVGYTDSNMA
        S IG LMY+MLCTRPD+   V ++S +      + W+ +K ++RYL+GT  +KL F      +  ++GY DS+ A
Subjt:  SAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSG---KLVLVGYTDSNMA

P0CV72 Secreted RxLR effector protein 1611.2e-1242.53Show/hide
Query:  MRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTF-GSGKLVLVGYTDSNMAARTEQKR
        M+ V Y SA+G++MY+M+ TRPD+   VGV+S F  +    HW+A+K ++RYL+ T +  L F  +G   LVGY+D++ A   E +R
Subjt:  MRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTF-GSGKLVLVGYTDSNMAARTEQKR

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-2257.14Show/hide
Query:  EEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR
        EEK  M KV Y+SA+GSLMY M+CTRPDI H VGVVS F+ N G +HWEA+K I+RYLRGT+   L FG    +L GYTD++MA   + ++
Subjt:  EEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR

Q8W4K5 VAN3-binding protein3.2e-1046.08Show/hide
Query:  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH----------FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREEN
        EVSPLTSGRLSHSSGPLN GGS TETDSPP+S S+EFDD+IK+    + T H           T    S  P   +  + +  ++K +K  ++EE R +N
Subjt:  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH----------FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREEN

Query:  GR
         +
Subjt:  GR

Arabidopsis top hitse value%identityAlignment
AT3G22810.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region7.0e-0537.5Show/hide
Query:  EVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF------HSEQYITCHFTPATSSLFPSPASEREALLFIKKKKLTEREERREENGR
        EVSP TSGRLSHSSGPLNG   + TDSPP+ S  + DD+ +F       + QY +   TP    +  +    +    ++K ++  ++EE R  N +
Subjt:  EVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF------HSEQYITCHFTPATSSLFPSPASEREALLFIKKKKLTEREERREENGR

AT3G63300.1 FORKED 12.3e-1146.08Show/hide
Query:  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH----------FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREEN
        EVSPLTSGRLSHSSGPLN GGS TETDSPP+S S+EFDD+IK+    + T H           T    S  P   +  + +  ++K +K  ++EE R +N
Subjt:  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH----------FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREEN

Query:  GR
         +
Subjt:  GR

AT3G63300.2 FORKED 12.3e-1146.08Show/hide
Query:  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH----------FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREEN
        EVSPLTSGRLSHSSGPLN GGS TETDSPP+S S+EFDD+IK+    + T H           T    S  P   +  + +  ++K +K  ++EE R +N
Subjt:  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH----------FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREEN

Query:  GR
         +
Subjt:  GR

AT4G14740.1 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region2.9e-0637.96Show/hide
Query:  IITTLRKHIHEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF-----HSEQYITCHF--TPATSSLFPSPASEREAL-LFIKKKKLTERE
        ++  +  H  EVSP TSGRLSHSSGPLNG   + TDSPPVS  E  DD+ +F     +S   +   F  T AT     + A++ + +  ++K ++  ++E
Subjt:  IITTLRKHIHEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF-----HSEQYITCHF--TPATSSLFPSPASEREAL-LFIKKKKLTERE

Query:  ERREENGR
        E R  N +
Subjt:  ERREENGR

AT4G14740.2 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region2.9e-0637.96Show/hide
Query:  IITTLRKHIHEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF-----HSEQYITCHF--TPATSSLFPSPASEREAL-LFIKKKKLTERE
        ++  +  H  EVSP TSGRLSHSSGPLNG   + TDSPPVS  E  DD+ +F     +S   +   F  T AT     + A++ + +  ++K ++  ++E
Subjt:  IITTLRKHIHEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF-----HSEQYITCHF--TPATSSLFPSPASEREAL-LFIKKKKLTERE

Query:  ERREENGR
        E R  N +
Subjt:  ERREENGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGCTATCAAGAGCAACTGGTCATACGCCCGCAGAGCAACCCCCAAAGGGCAAAGTACCTCAACACACGACCCAAAGCCTATGTGTGTGTCGAAGTGGGTCCCAAT
GACCTCATATATCATAACTACACTACGGAAACACATTCACGAAGTGTCGCCGTTGACGTCCGGGAGGCTTTCACACAGTAGTGGACCGTTGAACGGTGGGTCTTTGACTG
AAACAGACAGCCCGCCGGTGTCGTCGTCCGAAGAATTCGACGACCTCATTAAGTTTCACAGTGAACAGTACATCACTTGTCATTTCACGCCGGCAACGTCCTCCCTCTTT
CCGTCGCCGGCGTCGGAGAGGGAGGCCCTTCTTTTTATTAAAAAAAAAAAGTTAACGGAAAGAGAAGAAAGGAGAGAAGAAAATGGGAGAAAGAAAGAAAAAAAAATTCC
GGCTGGCCGCCGCCGCCGTTCGCCGGCAGCCGGCGGGGGTCGGCGACCGGAGCTGAAGAAGAAGGAGATAAGGAGGGAGAAAGAAGTTGGGGAGAAAGAAGTTGGGAGAA
CAGAAGATGGTGTTACAGAAGAGAAGGAGGAAATGAGAAAAGTCTCATATGCTTCGGCAATTGGGAGCTTGATGTATGTCATGCTATGTACTAGACCAGATATTGGTCAT
GTTGTTGGTGTTGTTAGTCATTTTATGTTTAATCTAGGAATACAACATTGGGAGGCAATCAAGTGCATCGTGAGATATTTGCGAGGCACCTCCAGTTTGAAGCTCACTTT
TGGAAGTGGAAAGCTAGTGCTTGTCGGTTACACTGATTCAAATATGGCAGCCCGAACCGAGCAGAAGCGAGACAAGATTGAGAAAAGAAGCAGGAAGTCGAGATTAGAGG
CTAGCGTCGAGACGCTGGTCTTGGCGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGCTATCAAGAGCAACTGGTCATACGCCCGCAGAGCAACCCCCAAAGGGCAAAGTACCTCAACACACGACCCAAAGCCTATGTGTGTGTCGAAGTGGGTCCCAAT
GACCTCATATATCATAACTACACTACGGAAACACATTCACGAAGTGTCGCCGTTGACGTCCGGGAGGCTTTCACACAGTAGTGGACCGTTGAACGGTGGGTCTTTGACTG
AAACAGACAGCCCGCCGGTGTCGTCGTCCGAAGAATTCGACGACCTCATTAAGTTTCACAGTGAACAGTACATCACTTGTCATTTCACGCCGGCAACGTCCTCCCTCTTT
CCGTCGCCGGCGTCGGAGAGGGAGGCCCTTCTTTTTATTAAAAAAAAAAAGTTAACGGAAAGAGAAGAAAGGAGAGAAGAAAATGGGAGAAAGAAAGAAAAAAAAATTCC
GGCTGGCCGCCGCCGCCGTTCGCCGGCAGCCGGCGGGGGTCGGCGACCGGAGCTGAAGAAGAAGGAGATAAGGAGGGAGAAAGAAGTTGGGGAGAAAGAAGTTGGGAGAA
CAGAAGATGGTGTTACAGAAGAGAAGGAGGAAATGAGAAAAGTCTCATATGCTTCGGCAATTGGGAGCTTGATGTATGTCATGCTATGTACTAGACCAGATATTGGTCAT
GTTGTTGGTGTTGTTAGTCATTTTATGTTTAATCTAGGAATACAACATTGGGAGGCAATCAAGTGCATCGTGAGATATTTGCGAGGCACCTCCAGTTTGAAGCTCACTTT
TGGAAGTGGAAAGCTAGTGCTTGTCGGTTACACTGATTCAAATATGGCAGCCCGAACCGAGCAGAAGCGAGACAAGATTGAGAAAAGAAGCAGGAAGTCGAGATTAGAGG
CTAGCGTCGAGACGCTGGTCTTGGCGTCTTGA
Protein sequenceShow/hide protein sequence
MLAIKSNWSYARRATPKGQSTSTHDPKPMCVSKWVPMTSYIITTLRKHIHEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKFHSEQYITCHFTPATSSLF
PSPASEREALLFIKKKKLTEREERREENGRKKEKKIPAGRRRRSPAAGGGRRPELKKKEIRREKEVGEKEVGRTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGH
VVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKRDKIEKRSRKSRLEASVETLVLAS