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Lag0032409 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032409
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S10-like
Genome locationchr11:32091408..32092615
RNA-Seq ExpressionLag0032409
SyntenyLag0032409
Gene Ontology termsGO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005326 - Plectin/S10, N-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR037447 - 40S Ribosomal protein S10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5565897.1 hypothetical protein RHGRI_001721 [Rhododendron griersonianum]5.0e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN        FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

KAG6426536.1 hypothetical protein SASPL_110761 [Salvia splendens]6.5e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN        FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

XP_024031356.1 40S ribosomal protein S10-1 [Morus notabilis]6.5e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN        FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

XP_024970104.1 40S ribosomal protein S10-1 [Cynara cardunculus var. scolymus]5.0e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN +      FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

XP_042000610.1 40S ribosomal protein S10-1-like [Salvia splendens]5.0e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN        FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

TrEMBL top hitse value%identityAlignment
A0A103YDJ2 Plectin/S10, N-terminal2.4e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN +      FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

A0A4D9ANN8 Small subunit ribosomal protein S10e2.4e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN        FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

A0A6J1JA51 40S ribosomal protein S10-1-like3.2e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN        FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

A0A6J5W863 S10_plectin domain-containing protein3.2e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN        FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

M5XFN5 S10_plectin domain-containing protein3.2e-2283.33Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII EKN        FQEGVCYAKKDYNLAKHPEIDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

SwissProt top hitse value%identityAlignment
P0DKK8 40S ribosomal protein S10-12.6e-2175.76Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII +KN        FQEGV YAKKDYNLAKHP+IDVPNLQVIK MQSFKSKEYVRETF+W  YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

P0DKK9 40S ribosomal protein S10-22.6e-2175.76Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII +KN        FQEGV YAKKDYNLAKHP+IDVPNLQVIK MQSFKSKEYVRETF+W  YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

Q9FFS8 40S ribosomal protein S10-21.0e-1768.66Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEID-VPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII E N        F+EGV +AKKD+NL +HP I+ VPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEID-VPNLQVIKPMQSFKSKEYVRETFAWMDYYW

Q9LTF2 40S ribosomal protein S10-31.2e-2175.76Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII E N +      F+EGVC+AKKD+NLAKHP IDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

Q9SW09 40S ribosomal protein S10-14.4e-2174.24Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII E N        F+EGVC+AKKD+NL KHP IDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

Arabidopsis top hitse value%identityAlignment
AT4G25740.1 RNA binding Plectin/S10 domain-containing protein3.1e-2274.24Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII E N        F+EGVC+AKKD+NL KHP IDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

AT4G25740.2 RNA binding Plectin/S10 domain-containing protein3.1e-2274.24Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII E N        F+EGVC+AKKD+NL KHP IDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW

AT5G41520.1 RNA binding Plectin/S10 domain-containing protein7.2e-1968.66Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEID-VPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII E N        F+EGV +AKKD+NL +HP I+ VPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEID-VPNLQVIKPMQSFKSKEYVRETFAWMDYYW

AT5G41520.2 RNA binding Plectin/S10 domain-containing protein9.1e-0695.24Show/hide
Query:  MQSFKSKEYVRETFAWMDYYW
        MQSFKSKEYVRETFAWM YYW
Subjt:  MQSFKSKEYVRETFAWMDYYW

AT5G52650.1 RNA binding Plectin/S10 domain-containing protein8.2e-2375.76Show/hide
Query:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW
        MII E N +      F+EGVC+AKKD+NLAKHP IDVPNLQVIK MQSFKSKEYVRETFAWM YYW
Subjt:  MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATTCTAGAGAAGAACCCAGAGAGATCTCCAAGTACCTCTTTTCAAGAGGGGGTTTGCTATGCCAAGAAGGACTACAATCTGGCCAAACACCCCGAAATCGATGT
TCCAAATTTGCAAGTGATTAAGCCGATGCAGAGCTTCAAGTCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGGATTACTACTGGAGGAAGCATGCAAGGAAGAAGA
CGATCTTCGAATCAATCTTCAATGGCGCTGTAACACCCCAAATTTCAGGTAAGCCCCCCCCATCTGGTTCCTTCGACCGCCGAAGTTCCTCCTTGCGTCTCTCCCTCTCG
TTGTCTCTCCTTCACCGCAGCCCTCTCTCTCAATCCTCCGTTAGAGGTCGTCGGTGCCGTTTCTCCCTCAACATCGATCGTTGTTCGAAGACCCGTTCGCCGTCGACCTA
CAATCCACGCGGCTGTTGTCGTCACGCACGTCCAGCTGCTTGCCAAGGTCGGTTTTGTCGTGTTCCTGTTGCTACCATCGGAGCCTATGGTCGCCGTCGCCGGAGACTTG
TAGTCAGCAGCTTCGAGTTCGTTGGCATTTTGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCATTCTAGAGAAGAACCCAGAGAGATCTCCAAGTACCTCTTTTCAAGAGGGGGTTTGCTATGCCAAGAAGGACTACAATCTGGCCAAACACCCCGAAATCGATGT
TCCAAATTTGCAAGTGATTAAGCCGATGCAGAGCTTCAAGTCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGGATTACTACTGGAGGAAGCATGCAAGGAAGAAGA
CGATCTTCGAATCAATCTTCAATGGCGCTGTAACACCCCAAATTTCAGGTAAGCCCCCCCCATCTGGTTCCTTCGACCGCCGAAGTTCCTCCTTGCGTCTCTCCCTCTCG
TTGTCTCTCCTTCACCGCAGCCCTCTCTCTCAATCCTCCGTTAGAGGTCGTCGGTGCCGTTTCTCCCTCAACATCGATCGTTGTTCGAAGACCCGTTCGCCGTCGACCTA
CAATCCACGCGGCTGTTGTCGTCACGCACGTCCAGCTGCTTGCCAAGGTCGGTTTTGTCGTGTTCCTGTTGCTACCATCGGAGCCTATGGTCGCCGTCGCCGGAGACTTG
TAGTCAGCAGCTTCGAGTTCGTTGGCATTTTGTTCTAG
Protein sequenceShow/hide protein sequence
MIILEKNPERSPSTSFQEGVCYAKKDYNLAKHPEIDVPNLQVIKPMQSFKSKEYVRETFAWMDYYWRKHARKKTIFESIFNGAVTPQISGKPPPSGSFDRRSSSLRLSLS
LSLLHRSPLSQSSVRGRRCRFSLNIDRCSKTRSPSTYNPRGCCRHARPAACQGRFCRVPVATIGAYGRRRRRLVVSSFEFVGILF