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Lag0032412 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032412
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:32137344..32137766
RNA-Seq ExpressionLag0032412
SyntenyLag0032412
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR64134.1 hypothetical protein CICLE_v10010478mg, partial [Citrus clementina]3.6e-0636.26Show/hide
Query:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI-SPPTIWL
        A T A+LEG +LVE L L  +V+ SDSL +I ++++R+   +E+  ++ +++    K      KH SR  N  AHN+A+  L  S P +W+
Subjt:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI-SPPTIWL

GAY45467.1 hypothetical protein CUMW_089680 [Citrus unshiu]4.0e-0536.59Show/hide
Query:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGL
        A T A+LEG +LVE L L  +V+ SDSL +I ++++R+   +E+  ++ +++    K      KH SR  N  AHN+A+  L
Subjt:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGL

VAH71877.1 unnamed protein product [Triticum turgidum subsp. durum]6.2e-0630.93Show/hide
Query:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLISPPTIWLDTFPLWI
        A+  AM +G +L + L +  +++ +D   L+  +N+  + +V    +  D   +C+ F  V F+H +R  N VAH LAR+  + PP +W D  P +I
Subjt:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLISPPTIWLDTFPLWI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]9.5e-0733.05Show/hide
Query:  LVAAVHGQSLSLLSLLCAQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI
        LVAA   +    LS L A+ + +LEG +     + T++ + SDSL  I ++   +    + Q  + +I+ +   F  + F H+SRQ N  AH LA+ G+ 
Subjt:  LVAAVHGQSLSLLSLLCAQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI

Query:  SPPT--IWLDTFPLWISD
        SP     WL  FP W+ D
Subjt:  SPPT--IWLDTFPLWISD

XP_030504827.1 uncharacterized protein LOC115719781 [Cannabis sativa]3.1e-0534.34Show/hide
Query:  SLLCAQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGL-ISPPTIWLDTFP
        S+  A+  A+L G R  + + L    +FSDSL L+S L  + +   E+  +  DIKV+   F G    H SR +N+ AH LA+  L I     W++  P
Subjt:  SLLCAQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGL-ISPPTIWLDTFP

TrEMBL top hitse value%identityAlignment
A0A1U8NYQ0 uncharacterized protein LOC1079523601.5e-0528.97Show/hide
Query:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI-SPPTIWLDTFPLWISD
        A+  A  +G    +    T + +  DS  +I  +N+      ++ +++ DIK M   F  ++FKH  R+ N VAH +AR+G+  S  T W++ FP  + D
Subjt:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI-SPPTIWLDTFPLWISD

Query:  RNCGEKS
            E++
Subjt:  RNCGEKS

A0A2H5NZB3 RNase H domain-containing protein1.9e-0536.59Show/hide
Query:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGL
        A T A+LEG +LVE L L  +V+ SDSL +I ++++R+   +E+  ++ +++    K      KH SR  N  AHN+A+  L
Subjt:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGL

A0A446PBN5 RNase H domain-containing protein3.0e-0630.93Show/hide
Query:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLISPPTIWLDTFPLWI
        A+  AM +G +L + L +  +++ +D   L+  +N+  + +V    +  D   +C+ F  V F+H +R  N VAH LAR+  + PP +W D  P +I
Subjt:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLISPPTIWLDTFPLWI

A0A6J1DX30 uncharacterized protein LOC1110248744.6e-0733.05Show/hide
Query:  LVAAVHGQSLSLLSLLCAQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI
        LVAA   +    LS L A+ + +LEG +     + T++ + SDSL  I ++   +    + Q  + +I+ +   F  + F H+SRQ N  AH LA+ G+ 
Subjt:  LVAAVHGQSLSLLSLLCAQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI

Query:  SPPT--IWLDTFPLWISD
        SP     WL  FP W+ D
Subjt:  SPPT--IWLDTFPLWISD

V4WCI4 RNase H domain-containing protein (Fragment)1.7e-0636.26Show/hide
Query:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI-SPPTIWL
        A T A+LEG +LVE L L  +V+ SDSL +I ++++R+   +E+  ++ +++    K      KH SR  N  AHN+A+  L  S P +W+
Subjt:  AQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLI-SPPTIWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCTCCTTGTTGTATTGGTGGCCGCAGTTCATGGCCAAAGTCTTTCTTTGTTATCTCTTTTGTGTGCACAAACTAAAGCGATGCTAGAAGGTTTTCGTCTTGTCGA
GAGATTGGATTTAACAAATATTGTTATCTTTTCTGATTCTCTGGGTTTGATCTCAATGCTCAACGAGCGAGTGCTTCCAACGGTTGAGGTTCAGACATTATTATGGGATA
TCAAGGTTATGTGTGATAAGTTTCGAGGAGTGAAATTTAAACACACTTCTAGACAATATAACATGGTAGCTCATAATCTGGCTCGTAAAGGTCTGATTTCTCCTCCGACC
ATATGGTTGGATACGTTTCCACTTTGGATTTCTGATAGGAATTGTGGTGAGAAGTCTTATTTTGTATCCCTTGAGGGATGTTCGAATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCTCCTTGTTGTATTGGTGGCCGCAGTTCATGGCCAAAGTCTTTCTTTGTTATCTCTTTTGTGTGCACAAACTAAAGCGATGCTAGAAGGTTTTCGTCTTGTCGA
GAGATTGGATTTAACAAATATTGTTATCTTTTCTGATTCTCTGGGTTTGATCTCAATGCTCAACGAGCGAGTGCTTCCAACGGTTGAGGTTCAGACATTATTATGGGATA
TCAAGGTTATGTGTGATAAGTTTCGAGGAGTGAAATTTAAACACACTTCTAGACAATATAACATGGTAGCTCATAATCTGGCTCGTAAAGGTCTGATTTCTCCTCCGACC
ATATGGTTGGATACGTTTCCACTTTGGATTTCTGATAGGAATTGTGGTGAGAAGTCTTATTTTGTATCCCTTGAGGGATGTTCGAATCTTTAA
Protein sequenceShow/hide protein sequence
MCLLVVLVAAVHGQSLSLLSLLCAQTKAMLEGFRLVERLDLTNIVIFSDSLGLISMLNERVLPTVEVQTLLWDIKVMCDKFRGVKFKHTSRQYNMVAHNLARKGLISPPT
IWLDTFPLWISDRNCGEKSYFVSLEGCSNL