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Lag0032421 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032421
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Genome locationchr11:32246658..32249505
RNA-Seq ExpressionLag0032421
SyntenyLag0032421
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]8.5e-0666.67Show/hide
Query:  DQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI
        DQLL+GWLYNSM  E+ATQVMGY+ A   W +IQE FG+
Subjt:  DQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]2.1e-0453.85Show/hide
Query:  DQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI
        D+LL+GWLYNSMA ++A QVMG+  ++  W ++QE FG+
Subjt:  DQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI

XP_038875135.1 uncharacterized protein LOC120067668 [Benincasa hispida]5.0e-0662.5Show/hide
Query:  ADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI
        ADQLL+GWLYNSMA E+A Q+MG++ AK  WD+I   FG+
Subjt:  ADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI

XP_038887015.1 uncharacterized protein LOC120077182 [Benincasa hispida]1.2e-0457.5Show/hide
Query:  ADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI
        ADQLL+GW YNSM  E+A Q+MG++ AK  WD+I   FG+
Subjt:  ADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]5.0e-0638.37Show/hide
Query:  MGVQIWSYGSWACRSGVIVARRSSRSKSLPLFFDRQALVGGILVQKADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI
        +G Q     S   + G+  A  SS    +  F++ + +V        DQLL+GWLYN M  E+A QVMGY+  K  W +IQE FG+
Subjt:  MGVQIWSYGSWACRSGVIVARRSSRSKSLPLFFDRQALVGGILVQKADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI

TrEMBL top hitse value%identityAlignment
A0A0A0M380 Uncharacterized protein6.6e-0453.85Show/hide
Query:  ADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFG
        AD LL+GWLYNS+  E+A Q++G++ AK  W++ QE FG
Subjt:  ADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFG

A0A5D3CPY2 Retrotransposon protein, putative, Ty1-copia subclass2.3e-0452.5Show/hide
Query:  ADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI
        +D LL+GW+YNSM  E+A Q+MG++ AK  W++IQ+ FG+
Subjt:  ADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI

A0A6J1D5J0 uncharacterized protein LOC1110175014.1e-0666.67Show/hide
Query:  DQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI
        DQLL+GWLYNSM  E+ATQVMGY+ A   W +IQE FG+
Subjt:  DQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI

A0A6J1DCW4 uncharacterized protein LOC1110195981.0e-0453.85Show/hide
Query:  DQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI
        D+LL+GWLYNSMA ++A QVMG+  ++  W ++QE FG+
Subjt:  DQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGTGTTCAGATCTGGAGTTATGGTTCGTGGGCGTGTAGATCTGGTGTCATTGTTGCGCGCAGATCTTCACGATCCAAATCTCTCCCTCTCTTCTTCGATCGACA
AGCTTTAGTCGGCGGGATTCTCGTGCAGAAAGCAGATCAATTACTTGTTGGGTGGTTGTACAACTCCATGGCTCTCGAAATTGCCACTCAAGTTATGGGTTACGATGAAG
CAAAACCACCTTGGGACTCTATTCAAGAATATTTCGGCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGGTGTTCAGATCTGGAGTTATGGTTCGTGGGCGTGTAGATCTGGTGTCATTGTTGCGCGCAGATCTTCACGATCCAAATCTCTCCCTCTCTTCTTCGATCGACA
AGCTTTAGTCGGCGGGATTCTCGTGCAGAAAGCAGATCAATTACTTGTTGGGTGGTTGTACAACTCCATGGCTCTCGAAATTGCCACTCAAGTTATGGGTTACGATGAAG
CAAAACCACCTTGGGACTCTATTCAAGAATATTTCGGCATTTAG
Protein sequenceShow/hide protein sequence
MMGVQIWSYGSWACRSGVIVARRSSRSKSLPLFFDRQALVGGILVQKADQLLVGWLYNSMALEIATQVMGYDEAKPPWDSIQEYFGI