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Lag0032434 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032434
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTHO complex subunit 4D
Genome locationchr11:32498042..32501923
RNA-Seq ExpressionLag0032434
SyntenyLag0032434
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000048 - IQ motif, EF-hand binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01611.1 THO complex subunit 4D [Cucumis melo var. makuwa]8.1e-2087.3Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIEMLGDN EMPVSARINVTG N R+RRTVVLT
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT

XP_004145851.1 THO complex subunit 4D [Cucumis sativus]8.1e-2083.33Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQA
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIEMLGDN EMPVSARINVTG N R+RRTVVLT ++
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQA

XP_008457020.1 PREDICTED: THO complex subunit 4D [Cucumis melo]8.1e-2087.3Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIEMLGDN EMPVSARINVTG N R+RRTVVLT
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT

XP_022143379.1 THO complex subunit 4D-like [Momordica charantia]8.1e-2083.33Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQA
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIE+LGDN EMPVSARINVTG+N RSRRTVVLT ++
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQA

XP_038896761.1 THO complex subunit 4D-like [Benincasa hispida]2.8e-2088.89Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT
        GS EVVYTRRSDAFAAL  +NNVLLDG+PMKIEMLGDN EMPVSARINVTGVN RSRRTVVLT
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT

TrEMBL top hitse value%identityAlignment
A0A0A0L717 RRM domain-containing protein3.9e-2083.58Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQAL
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIEMLGDN EMPVSARINVTG N R+RRTVVLT + L
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQAL

A0A1S3C452 THO complex subunit 4D3.9e-2087.3Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIEMLGDN EMPVSARINVTG N R+RRTVVLT
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT

A0A5D3BPA9 THO complex subunit 4D3.9e-2087.3Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIEMLGDN EMPVSARINVTG N R+RRTVVLT
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLT

A0A6J1CP51 THO complex subunit 4D-like3.9e-2083.33Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQA
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIE+LGDN EMPVSARINVTG+N RSRRTVVLT ++
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQA

A0A6J1J564 THO complex subunit 4D-like6.7e-2083.33Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQA
        GS EVVYTRRSDAFAAL  +NNVLLDGKPMKIEMLGDN + PVSARINVTGVN RSRRTVVLT ++
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQA

SwissProt top hitse value%identityAlignment
Q501D2 Protein IQ-DOMAIN 304.1e-1456.72Show/hide
Query:  VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQFSISSNTFV
        ++ LQALIRGH+VRRQ V+TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L        +N+ V
Subjt:  VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQFSISSNTFV

Q6NQ72 THO complex subunit 4D1.3e-1260.61Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDN--VEMPVSAR--INVTGVNARSRRTVVL
        G+ EVVY RRSDAF AL  +NNVLLDG+PM++E+LG N   E P+S R  +NVTG+N R +RTVV+
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDN--VEMPVSAR--INVTGVNARSRRTVVL

Q8GZ87 Protein IQ-DOMAIN 288.7e-0954.24Show/hide
Query:  RSRRTV--VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSK
        R+ RT+  ++ LQA+IRGHLVRRQ +AT  C+ GIVKFQA+ RG++ R SD+  + Q K
Subjt:  RSRRTV--VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSK

Q8L4D8 Protein IQ-DOMAIN 312.5e-1164.81Show/hide
Query:  VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL
        ++ LQALIRGHLVRRQ VATL  ++GIV+ QA ARGR +R SD+G +V  KCRL
Subjt:  VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL

Q94EH8 THO complex subunit 4C9.0e-1461.9Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVE-MPVSARINVTGVNARSRRTVVL
        GS EVVY RRSDA  A+  +NNVLLDG+PMK+E+LG N E  PV+AR+NVTG+N R +R+V +
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVE-MPVSARINVTGVNARSRRTVVL

Arabidopsis top hitse value%identityAlignment
AT1G18840.1 IQ-domain 302.9e-1556.72Show/hide
Query:  VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQFSISSNTFV
        ++ LQALIRGH+VRRQ V+TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L        +N+ V
Subjt:  VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQFSISSNTFV

AT1G18840.2 IQ-domain 302.9e-1556.72Show/hide
Query:  VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQFSISSNTFV
        ++ LQALIRGH+VRRQ V+TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L        +N+ V
Subjt:  VLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQFSISSNTFV

AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.4e-1561.9Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVE-MPVSARINVTGVNARSRRTVVL
        GS EVVY RRSDA  A+  +NNVLLDG+PMK+E+LG N E  PV+AR+NVTG+N R +R+V +
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVE-MPVSARINVTGVNARSRRTVVL

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.4e-1561.9Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVE-MPVSARINVTGVNARSRRTVVL
        GS EVVY RRSDA  A+  +NNVLLDG+PMK+E+LG N E  PV+AR+NVTG+N R +R+V +
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDNVE-MPVSARINVTGVNARSRRTVVL

AT5G37720.1 ALWAYS EARLY 49.3e-1460.61Show/hide
Query:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDN--VEMPVSAR--INVTGVNARSRRTVVL
        G+ EVVY RRSDAF AL  +NNVLLDG+PM++E+LG N   E P+S R  +NVTG+N R +RTVV+
Subjt:  GSTEVVYTRRSDAFAALMCHNNVLLDGKPMKIEMLGDN--VEMPVSAR--INVTGVNARSRRTVVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCTCTCTCCCCGAAAATACCTCCAACGGTACCTCTCCCTTGTTTTCTCTCTCACCGAAGACGTTTCTTCCTCTCATCAGCGGCGGCACGTTGTGGATAGTCCTGG
GTTTCTTCTTCTCACAGGTGGTGTGGCGTGGGTTGTCGTGGGTGTTACTTGTTTTTGCCGTGGGTGGTTGTTCTTTGCTGCGGGTGGTTGTTTCGGCTGTGGGTGGTGGA
CGTTGAGGTCGTGGGTTGTGCTCGGTAGTAGATCTAAGTTGCAGTTGTACATGCCTTACCTCGTAATCATTCCTTCAATCAATGAAACGGAGCTGAGTTTTGTGTCTAAG
TTTGTGTTGAGTTTTGGAGCCCAAAACAAGACCCATCAAATTCATGCAGCAAGAAATGCATGCGGCGAAAAAGTCATGCGGAAAGAAATGCATGCGACGAGAAAGTCATG
CGATGAGAAATGCATGCGACGAGAAAGTCATGCGGCGAGAAAAGTCACTGTGCTGAAATTTCTCTTCAGCATCTTGTGTGGCACGCTCCGAACGACCCAGTACGGGGGTC
TGGCTGACCGGTCAGCGAGTCGGGGTCCAGGGGCGAAGCGCCCGATGGGGGGCTCGACGGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGATGTGCCAT
AACAATGTTTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGTTGAAATGCCAGTTTCTGCACGTATAAATGTTACTGGAGTGAATGCAAGAAGTAG
GAGGACAGTTGTTCTAACGTTGCAGGCGCTTATTCGTGGTCACTTGGTAAGGAGACAAGTTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAGGCTATTG
CTCGAGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAGCAAATGTAGATTAATGCAGCCACAGTTTTCCATTTCCTCCAATACATTTGTAATGAATTTG
ATATCAAAGCTTCTCAAATTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCTCTCTCCCCGAAAATACCTCCAACGGTACCTCTCCCTTGTTTTCTCTCTCACCGAAGACGTTTCTTCCTCTCATCAGCGGCGGCACGTTGTGGATAGTCCTGG
GTTTCTTCTTCTCACAGGTGGTGTGGCGTGGGTTGTCGTGGGTGTTACTTGTTTTTGCCGTGGGTGGTTGTTCTTTGCTGCGGGTGGTTGTTTCGGCTGTGGGTGGTGGA
CGTTGAGGTCGTGGGTTGTGCTCGGTAGTAGATCTAAGTTGCAGTTGTACATGCCTTACCTCGTAATCATTCCTTCAATCAATGAAACGGAGCTGAGTTTTGTGTCTAAG
TTTGTGTTGAGTTTTGGAGCCCAAAACAAGACCCATCAAATTCATGCAGCAAGAAATGCATGCGGCGAAAAAGTCATGCGGAAAGAAATGCATGCGACGAGAAAGTCATG
CGATGAGAAATGCATGCGACGAGAAAGTCATGCGGCGAGAAAAGTCACTGTGCTGAAATTTCTCTTCAGCATCTTGTGTGGCACGCTCCGAACGACCCAGTACGGGGGTC
TGGCTGACCGGTCAGCGAGTCGGGGTCCAGGGGCGAAGCGCCCGATGGGGGGCTCGACGGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGATGTGCCAT
AACAATGTTTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGTTGAAATGCCAGTTTCTGCACGTATAAATGTTACTGGAGTGAATGCAAGAAGTAG
GAGGACAGTTGTTCTAACGTTGCAGGCGCTTATTCGTGGTCACTTGGTAAGGAGACAAGTTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAGGCTATTG
CTCGAGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAGCAAATGTAGATTAATGCAGCCACAGTTTTCCATTTCCTCCAATACATTTGTAATGAATTTG
ATATCAAAGCTTCTCAAATTGTTTTGA
Protein sequenceShow/hide protein sequence
MCLSPRKYLQRYLSLVFSLTEDVSSSHQRRHVVDSPGFLLLTGGVAWVVVGVTCFCRGWLFFAAGGCFGCGWWTLRSWVVLGSRSKLQLYMPYLVIIPSINETELSFVSK
FVLSFGAQNKTHQIHAARNACGEKVMRKEMHATRKSCDEKCMRRESHAARKVTVLKFLFSILCGTLRTTQYGGLADRSASRGPGAKRPMGGSTEVVYTRRSDAFAALMCH
NNVLLDGKPMKIEMLGDNVEMPVSARINVTGVNARSRRTVVLTLQALIRGHLVRRQVVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQFSISSNTFVMNL
ISKLLKLF