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Lag0032437 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032437
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:32529558..32530432
RNA-Seq ExpressionLag0032437
SyntenyLag0032437
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]2.8e-0928.5Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------
        +GFRDLE FNQALLAK+CWRI+    S +AR+ + RY+PS  FL+A                                                      
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------

Query:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRL-GQGPLLAQSPSSSSPELINRWWNACWNMKMPS
         +P++ RV DLF +SGQWN  L++  F  QEV                             KSGYRL G          S+  +L +++W   W +K+P+
Subjt:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRL-GQGPLLAQSPSSSSPELINRWWNACWNMKMPS

ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]1.3e-0928.57Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------
        +GFRDLE FNQALLAK+CWRI+    S +AR+ + RY+PS  FL+A                                                      
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------

Query:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRLGQGPLLAQSPSSSSP----ELINRWWNACWNMK
         +P++ RV DLF +SGQWN  L++  F  QEV                             KSGYRL +   L +   S  P    +L +++W   W +K
Subjt:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRLGQGPLLAQSPSSSSP----ELINRWWNACWNMK

Query:  MPS
        +P+
Subjt:  MPS

XP_013594406.1 PREDICTED: uncharacterized protein LOC106302444 [Brassica oleracea var. oleracea]3.3e-1033.12Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVA------RVRDLFM--------ASGQWNENLIRQHFSPQEV----------
        +GF+D+E FNQ LLAK+ WR+     S LAR+L+ RY+P S FL+ +P A       + DL +        AS +WNE  +RQ F  ++V          
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVA------RVRDLFM--------ASGQWNENLIRQHFSPQEV----------

Query:  -----------------SKSGYRLGQGPLLAQSPSSSS-PELINRWWNACWNMK
                         SKSGY+L +     QSP+    P L  + W+  W  K
Subjt:  -----------------SKSGYRLGQGPLLAQSPSSSS-PELINRWWNACWNMK

XP_013658904.1 uncharacterized protein LOC106363756 [Brassica napus]3.3e-1033.12Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVA------RVRDLFM--------ASGQWNENLIRQHFSPQEV----------
        +GF+D+E FNQ LLAK+ WR+     S LAR+L+ RY+P S FL+ +P A       + DL +        AS +WNE  +RQ F  ++V          
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVA------RVRDLFM--------ASGQWNENLIRQHFSPQEV----------

Query:  -----------------SKSGYRLGQGPLLAQSPSSSS-PELINRWWNACWNMK
                         SKSGY+L +     QSP+    P L  + W+  W  K
Subjt:  -----------------SKSGYRLGQGPLLAQSPSSSS-PELINRWWNACWNMK

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]7.4e-1028.22Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------
        MGFRDLE FN+ALLAK+CWRI++   S L+RVLKGRY+    F++A                                                      
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------

Query:  -MP-VARVRDLF-MASGQWNENLIRQHFSPQEVS----------------------------KSGYRLG--QGPLLAQSPSSSSPELINRWWNACWNMKM
         +P V+RV  L     G W  +++R  F+P E                              +SGY++     P + Q+PSSSS E +  WWN  W M +
Subjt:  -MP-VARVRDLF-MASGQWNENLIRQHFSPQEVS----------------------------KSGYRLG--QGPLLAQSPSSSSPELINRWWNACWNMKM

Query:  PS
        P+
Subjt:  PS

TrEMBL top hitse value%identityAlignment
A0A251NPF0 Reverse transcriptase domain-containing protein1.4e-0928.5Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------
        +GFRDLE FNQALLAK+CWRI+    S +AR+ + RY+PS  FL+A                                                      
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------

Query:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRL-GQGPLLAQSPSSSSPELINRWWNACWNMKMPS
         +P++ RV DLF +SGQWN  L++  F  QEV                             KSGYRL G          S+  +L +++W   W +K+P+
Subjt:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRL-GQGPLLAQSPSSSSPELINRWWNACWNMKMPS

A0A6J1DAR4 uncharacterized protein LOC1110189543.6e-1028.22Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------
        MGFRDLE FN+ALLAK+CWRI++   S L+RVLKGRY+    F++A                                                      
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------

Query:  -MP-VARVRDLF-MASGQWNENLIRQHFSPQEVS----------------------------KSGYRLG--QGPLLAQSPSSSSPELINRWWNACWNMKM
         +P V+RV  L     G W  +++R  F+P E                              +SGY++     P + Q+PSSSS E +  WWN  W M +
Subjt:  -MP-VARVRDLF-MASGQWNENLIRQHFSPQEVS----------------------------KSGYRLG--QGPLLAQSPSSSSPELINRWWNACWNMKM

Query:  PS
        P+
Subjt:  PS

A0A803Q6M0 Uncharacterized protein3.0e-0929.84Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAM--------PVARVRDLFMASGQWNENLIRQHFSPQEVS-KSGYRLGQGPLLAQ
        +GFR L+ FNQA+LAK+ WRI +  +  L ++ + +Y+P + FLD+          +  +  L        ++   QH      S K+GY + +  +   
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAM--------PVARVRDLFMASGQWNENLIRQHFSPQEVS-KSGYRLGQGPLLAQ

Query:  SPSSSSPELINRWWNACWNMKMPS
         PSSS    + RWW + W++ +PS
Subjt:  SPSSSSPELINRWWNACWNMKMPS

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)1.4e-0928.5Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------
        +GFRDLE FNQALLAK+CWRI+    S +AR+ + RY+PS  FL+A                                                      
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------

Query:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRL-GQGPLLAQSPSSSSPELINRWWNACWNMKMPS
         +P++ RV DLF +SGQWN  L++  F  QEV                             KSGYRL G          S+  +L +++W   W +K+P+
Subjt:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRL-GQGPLLAQSPSSSSPELINRWWNACWNMKMPS

M5WJW2 Reverse transcriptase domain-containing protein6.1e-1028.57Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------
        +GFRDLE FNQALLAK+CWRI+    S +AR+ + RY+PS  FL+A                                                      
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDA------------------------------------------------------

Query:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRLGQGPLLAQSPSSSSP----ELINRWWNACWNMK
         +P++ RV DLF +SGQWN  L++  F  QEV                             KSGYRL +   L +   S  P    +L +++W   W +K
Subjt:  -MPVA-RVRDLFMASGQWNENLIRQHFSPQEVS----------------------------KSGYRLGQGPLLAQSPSSSSP----ELINRWWNACWNMK

Query:  MPS
        +P+
Subjt:  MPS

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003106.8e-0651.11Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLD
        +GFRDL  FNQALLAK+ +RI+ Q  + L+R+L+ RY+P S  ++
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLD

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein3.7e-0737.68Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVARVRDLFMASGQWNENLIRQ
        +GF+D+E FN ALL K+ WR++S+  S +A+V K RY+  S+ L+A P+         S   ++ ++RQ
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVARVRDLFMASGQWNENLIRQ

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.8e-0751.11Show/hide
Query:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLD
        +GFRDL  FNQALLAK+ +RI+ Q  + L+R+L+ RY+P S  ++
Subjt:  MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTTAGGGACCTGGAGACCTTTAATCAGGCCCTACTAGCCAAGCGGTGCTGGAGGATAGTCAGTCAGTCGACTTCTTACTTGGCTCGTGTTCTGAAAGGACGGTA
TTATCCGTCCTCGGAGTTCTTGGATGCAATGCCTGTTGCTAGAGTTAGGGATTTGTTCATGGCGTCAGGGCAATGGAATGAGAATCTTATTCGGCAACACTTTAGTCCGC
AGGAGGTAAGTAAAAGTGGGTATCGTCTAGGCCAAGGCCCTTTGTTGGCCCAAAGCCCTTCTTCTTCATCTCCTGAGTTAATAAATAGATGGTGGAATGCTTGTTGGAAT
ATGAAGATGCCTAGTTTTGGGACTATTTTGTCCAAATGCAAGGCAGACGATATCAAGTTCCTCCTCCGAGATGTGAAGGATGAGCTGGAGTGGGTGGTGTTATTGTGGGC
GATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTTAGGGACCTGGAGACCTTTAATCAGGCCCTACTAGCCAAGCGGTGCTGGAGGATAGTCAGTCAGTCGACTTCTTACTTGGCTCGTGTTCTGAAAGGACGGTA
TTATCCGTCCTCGGAGTTCTTGGATGCAATGCCTGTTGCTAGAGTTAGGGATTTGTTCATGGCGTCAGGGCAATGGAATGAGAATCTTATTCGGCAACACTTTAGTCCGC
AGGAGGTAAGTAAAAGTGGGTATCGTCTAGGCCAAGGCCCTTTGTTGGCCCAAAGCCCTTCTTCTTCATCTCCTGAGTTAATAAATAGATGGTGGAATGCTTGTTGGAAT
ATGAAGATGCCTAGTTTTGGGACTATTTTGTCCAAATGCAAGGCAGACGATATCAAGTTCCTCCTCCGAGATGTGAAGGATGAGCTGGAGTGGGTGGTGTTATTGTGGGC
GATCTGA
Protein sequenceShow/hide protein sequence
MGFRDLETFNQALLAKRCWRIVSQSTSYLARVLKGRYYPSSEFLDAMPVARVRDLFMASGQWNENLIRQHFSPQEVSKSGYRLGQGPLLAQSPSSSSPELINRWWNACWN
MKMPSFGTILSKCKADDIKFLLRDVKDELEWVVLLWAI