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Lag0032462 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032462
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr11:32923513..32925600
RNA-Seq ExpressionLag0032462
SyntenyLag0032462
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB93772.1 hypothetical protein L484_010911 [Morus notabilis]1.2e-0437.04Show/hide
Query:  DPPLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWESILGKPQSPVQWSSKPTNSKLQ
        +P L   +  DNF++ KNQ+LN+++A+G   F DGS P   +FL     ++NPDY  W+ +    QSP +      N +LQ
Subjt:  DPPLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWESILGKPQSPVQWSSKPTNSKLQ

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.0e-0447.37Show/hide
Query:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE
        PL   +   N  + KNQLLNV++ANGL  F +G  PI  KFLD    Q+NP ++ WE
Subjt:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE

RVW73808.1 hypothetical protein CK203_058306 [Vitis vinifera]2.6e-0445.83Show/hide
Query:  DNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW
        +N++++KN +LNV++ANGL  F DGS P L +FLD     +NP++  W
Subjt:  DNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]2.2e-0846.51Show/hide
Query:  ESILGKPQSPVQWSSKPTNSKLQCQICGKFDHTTLISHHHTNLAYQTPPQLQALVHTSTNPVSNMSQAFSDTSSTVQVEFSHPDES
        +SILGKPQS  +W  KP++SK+QCQICGK  H+  + +H TN+AY      QAL H    P        S T  +   EF HPDES
Subjt:  ESILGKPQSPVQWSSKPTNSKLQCQICGKFDHTTLISHHHTNLAYQTPPQLQALVHTSTNPVSNMSQAFSDTSSTVQVEFSHPDES

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]1.5e-0449.12Show/hide
Query:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE
        PL   ++ +NF++ KNQLLN V+ANGL G+ DG+I    +FLD +  Q NP Y  WE
Subjt:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]8.5e-0828.92Show/hide
Query:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW--------------------------------------------
        PL   +  DN+++ KNQLLNVV+ NGL G  D +     KFLDL    +NP+Y  W                                            
Subjt:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW--------------------------------------------

Query:  ---------------------------------------------ESILGKPQ-SPV--QWSSKPTN----SKLQCQICGKFDHTTLISHHHTNLAYQTP
                                                      SILG+PQ +P+   W  KP N    SK +CQICGKF HT LI HH  NL YQ P
Subjt:  ---------------------------------------------ESILGKPQ-SPV--QWSSKPTN----SKLQCQICGKFDHTTLISHHHTNLAYQTP

Query:  PQLQ
        P L+
Subjt:  PQLQ

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE19.5e-0547.37Show/hide
Query:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE
        PL   +   N  + KNQLLNV++ANGL  F +G  PI  KFLD    Q+NP ++ WE
Subjt:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE

A0A438GNQ2 Uncharacterized protein1.2e-0445.83Show/hide
Query:  DNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW
        +N++++KN +LNV++ANGL  F DGS P L +FLD     +NP++  W
Subjt:  DNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW

A0A6J1DQX7 uncharacterized protein LOC1110223151.1e-0846.51Show/hide
Query:  ESILGKPQSPVQWSSKPTNSKLQCQICGKFDHTTLISHHHTNLAYQTPPQLQALVHTSTNPVSNMSQAFSDTSSTVQVEFSHPDES
        +SILGKPQS  +W  KP++SK+QCQICGK  H+  + +H TN+AY      QAL H    P        S T  +   EF HPDES
Subjt:  ESILGKPQSPVQWSSKPTNSKLQCQICGKFDHTTLISHHHTNLAYQTPPQLQALVHTSTNPVSNMSQAFSDTSSTVQVEFSHPDES

A0A6J1DQX7 uncharacterized protein LOC1110223157.3e-0549.12Show/hide
Query:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE
        PL   ++ +NF++ KNQLLN V+ANGL G+ DG+I    +FLD +  Q NP Y  WE
Subjt:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE

A0A6J1DQX7 uncharacterized protein LOC1110223154.1e-0828.92Show/hide
Query:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW--------------------------------------------
        PL   +  DN+++ KNQLLNVV+ NGL G  D +     KFLDL    +NP+Y  W                                            
Subjt:  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW--------------------------------------------

Query:  ---------------------------------------------ESILGKPQ-SPV--QWSSKPTN----SKLQCQICGKFDHTTLISHHHTNLAYQTP
                                                      SILG+PQ +P+   W  KP N    SK +CQICGKF HT LI HH  NL YQ P
Subjt:  ---------------------------------------------ESILGKPQ-SPV--QWSSKPTN----SKLQCQICGKFDHTTLISHHHTNLAYQTP

Query:  PQLQ
        P L+
Subjt:  PQLQ

W9RJ64 Uncharacterized protein5.6e-0537.04Show/hide
Query:  DPPLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWESILGKPQSPVQWSSKPTNSKLQ
        +P L   +  DNF++ KNQ+LN+++A+G   F DGS P   +FL     ++NPDY  W+ +    QSP +      N +LQ
Subjt:  DPPLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWESILGKPQSPVQWSSKPTNSKLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAGATCTCGTTCTTTTGACTGGAAAGGGAATATGGATTGGCCAGAGTCTCTGCAAGGTTCGAGTTCAGTTTGTTTGATTCTCCATCATGCCTTTGAACTCGCCAT
TGAAGATCCCCCTCTCCTTTTTGGAGTTCATGTAGACAATTTTATAGTTAAGAAGAATCAACTTCTCAATGTCGTGCTAGCAAATGGACTATCGGGTTTTTTCGATGGCT
CAATTCCAATTCTACTAAAATTTCTGGATCTGAACAACACTCAACTAAATCCTGATTATCTAGGATGGGAGAGTATCCTTGGCAAGCCCCAATCCCCTGTTCAGTGGTCT
TCTAAACCAACAAATTCCAAGTTGCAATGCCAAATATGTGGCAAGTTTGACCACACAACCCTGATCTCTCATCATCACACTAACCTTGCATACCAAACCCCTCCTCAACT
GCAAGCTCTTGTTCATACTTCAACCAATCCTGTCTCCAATATGTCTCAAGCTTTTTCAGATACCTCATCAACTGTCCAAGTTGAATTTTCTCATCCTGATGAATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAGATCTCGTTCTTTTGACTGGAAAGGGAATATGGATTGGCCAGAGTCTCTGCAAGGTTCGAGTTCAGTTTGTTTGATTCTCCATCATGCCTTTGAACTCGCCAT
TGAAGATCCCCCTCTCCTTTTTGGAGTTCATGTAGACAATTTTATAGTTAAGAAGAATCAACTTCTCAATGTCGTGCTAGCAAATGGACTATCGGGTTTTTTCGATGGCT
CAATTCCAATTCTACTAAAATTTCTGGATCTGAACAACACTCAACTAAATCCTGATTATCTAGGATGGGAGAGTATCCTTGGCAAGCCCCAATCCCCTGTTCAGTGGTCT
TCTAAACCAACAAATTCCAAGTTGCAATGCCAAATATGTGGCAAGTTTGACCACACAACCCTGATCTCTCATCATCACACTAACCTTGCATACCAAACCCCTCCTCAACT
GCAAGCTCTTGTTCATACTTCAACCAATCCTGTCTCCAATATGTCTCAAGCTTTTTCAGATACCTCATCAACTGTCCAAGTTGAATTTTCTCATCCTGATGAATCGTGA
Protein sequenceShow/hide protein sequence
MVRSRSFDWKGNMDWPESLQGSSSVCLILHHAFELAIEDPPLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWESILGKPQSPVQWS
SKPTNSKLQCQICGKFDHTTLISHHHTNLAYQTPPQLQALVHTSTNPVSNMSQAFSDTSSTVQVEFSHPDES