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Lag0032468 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032468
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr11:32986911..32987674
RNA-Seq ExpressionLag0032468
SyntenyLag0032468
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037088.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-1539.69Show/hide
Query:  KLIPKMIETNSIKTITLPNNPSPQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV
        K++P    +N+++   +      +R+  ++R TD ELQ++KEKGLCYRCDE F  GH+CK K+L L +V +D          ++  E    E+E+  +EV
Subjt:  KLIPKMIETNSIKTITLPNNPSPQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV

Query:  D-MAELSLNIVVKFSSPGTLKIKGKIEDRDM
          + +LSLN VV  ++PGT KIKGK+E+R++
Subjt:  D-MAELSLNIVVKFSSPGTLKIKGKIEDRDM

KAA0039532.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1545.37Show/hide
Query:  QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV-DMAELSLNIVVKFSSPGTLKIK
        +R+  F+R TD ELQ+QK+KGLCY CDE F  GH+CK +ELRL +V +D+             E   EE+ +  +E+  + ELSLN VV  ++PGT K++
Subjt:  QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV-DMAELSLNIVVKFSSPGTLKIK

Query:  GKIEDRDM
        GK+EDR++
Subjt:  GKIEDRDM

KAA0062470.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-1643.8Show/hide
Query:  RPKLIPKMIETNSIKTITLPNNPS---PQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKES--KVEEV
        R + + + I T+S ++I L N  S    QR+  F+R T+ ELQ+Q++KGLCYRCDE F  GH+CK KE RL +V +D+       E +E ++S  + E V
Subjt:  RPKLIPKMIETNSIKTITLPNNPS---PQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKES--KVEEV

Query:  EDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM
        E SS    + ELSLN VV  ++PGT K+KG ++DR++
Subjt:  EDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM

XP_019056647.1 PREDICTED: uncharacterized protein LOC104801738 isoform X1 [Tarenaya hassleriana]1.6e-1642.99Show/hide
Query:  QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEVDMAELSLNIVVKFSSPGTLKIKG
        ++K  FKR++D E + +++KGLC+RCDEKFFVGH+CK KEL++++ +  +   +   E  + +E  +EE      E + AELSLN VV  +SP TLKI+G
Subjt:  QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEVDMAELSLNIVVKFSSPGTLKIKG

Query:  KIEDRDM
         + D+++
Subjt:  KIEDRDM

XP_022154744.1 uncharacterized protein LOC111021922 [Momordica charantia]2.5e-1738.3Show/hide
Query:  NRPKLIPKMIETNSIKTITLPNNPSP-----QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHV---EGKESK
        N PK  PK  ET + +T+TL     P     ++++  K+LT+ E Q +K+KGLC+R +EK+ +GH+CK +EL++ +V +D   +    E +   EG+E+ 
Subjt:  NRPKLIPKMIETNSIKTITLPNNPSP-----QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHV---EGKESK

Query:  VEEVEDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM
        + E        ++AEL+LN VV FS+PGT+K++G IED+++
Subjt:  VEEVEDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM

TrEMBL top hitse value%identityAlignment
A0A5A7T7U7 Ty3-gypsy retrotransposon protein6.7e-1645.37Show/hide
Query:  QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV-DMAELSLNIVVKFSSPGTLKIK
        +R+  F+R TD ELQ+QK+KGLCY CDE F  GH+CK +ELRL +V +D+             E   EE+ +  +E+  + ELSLN VV  ++PGT K++
Subjt:  QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV-DMAELSLNIVVKFSSPGTLKIK

Query:  GKIEDRDM
        GK+EDR++
Subjt:  GKIEDRDM

A0A5A7V5G0 Ty3/gypsy retrotransposon protein3.0e-1643.8Show/hide
Query:  RPKLIPKMIETNSIKTITLPNNPS---PQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKES--KVEEV
        R + + + I T+S ++I L N  S    QR+  F+R T+ ELQ+Q++KGLCYRCDE F  GH+CK KE RL +V +D+       E +E ++S  + E V
Subjt:  RPKLIPKMIETNSIKTITLPNNPS---PQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKES--KVEEV

Query:  EDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM
        E SS    + ELSLN VV  ++PGT K+KG ++DR++
Subjt:  EDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM

A0A5D3BTN5 Ty3-gypsy retrotransposon protein3.3e-1546.6Show/hide
Query:  FKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV-DMAELSLNIVVKFSSPGTLKIKGKIED
        F+R TD ELQ +KEKGLCYRCDE F  GH+CK +ELRL +V +D+             E   EE+ +  +E+  + ELSLN VV  ++PGT K++GK+ED
Subjt:  FKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV-DMAELSLNIVVKFSSPGTLKIKGKIED

Query:  RDM
         ++
Subjt:  RDM

A0A5D3C895 Ty3-gypsy retrotransposon protein1.5e-1539.69Show/hide
Query:  KLIPKMIETNSIKTITLPNNPSPQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV
        K++P    +N+++   +      +R+  ++R TD ELQ++KEKGLCYRCDE F  GH+CK K+L L +V +D          ++  E    E+E+  +EV
Subjt:  KLIPKMIETNSIKTITLPNNPSPQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEV

Query:  D-MAELSLNIVVKFSSPGTLKIKGKIEDRDM
          + +LSLN VV  ++PGT KIKGK+E+R++
Subjt:  D-MAELSLNIVVKFSSPGTLKIKGKIEDRDM

A0A6J1DN22 Reverse transcriptase1.2e-1738.3Show/hide
Query:  NRPKLIPKMIETNSIKTITLPNNPSP-----QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHV---EGKESK
        N PK  PK  ET + +T+TL     P     ++++  K+LT+ E Q +K+KGLC+R +EK+ +GH+CK +EL++ +V +D   +    E +   EG+E+ 
Subjt:  NRPKLIPKMIETNSIKTITLPNNPSP-----QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHV---EGKESK

Query:  VEEVEDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM
        + E        ++AEL+LN VV FS+PGT+K++G IED+++
Subjt:  VEEVEDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAGGCCCAGTGCAAGCGTGGAGAACAACTACGACCAACACAATAGGCCAAAGTTAATACCTAAGATGATTGAAACCAACTCGATTAAAACCATCACTCTGCCCAA
TAACCCATCACCTCAACGAAAGAAGTTGTTTAAGCGTCTGACAGACTTAGAATTACAATCTCAAAAAGAAAAAGGCTTATGTTATCGATGCGATGAGAAGTTTTTCGTGG
GGCATAAGTGTAAGGGAAAAGAGCTTAGATTGTTGATTGTGGACAACGATGTAGCTGCAAAACAGCACGCCAGCGAACATGTAGAAGGGAAGGAGAGTAAAGTGGAAGAG
GTGGAAGACTCATCGTTGGAAGTAGATATGGCCGAACTTTCCCTCAACATAGTCGTCAAGTTCTCGTCACCGGGCACCCTCAAAATCAAAGGCAAGATCGAAGATAGGGA
CATGTGGCTGAAGACACTCGACATGACCACTGCAGACCGGAAATCGCTCACTCTGTCGGACACGGGGATGAAAAAGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAGGCCCAGTGCAAGCGTGGAGAACAACTACGACCAACACAATAGGCCAAAGTTAATACCTAAGATGATTGAAACCAACTCGATTAAAACCATCACTCTGCCCAA
TAACCCATCACCTCAACGAAAGAAGTTGTTTAAGCGTCTGACAGACTTAGAATTACAATCTCAAAAAGAAAAAGGCTTATGTTATCGATGCGATGAGAAGTTTTTCGTGG
GGCATAAGTGTAAGGGAAAAGAGCTTAGATTGTTGATTGTGGACAACGATGTAGCTGCAAAACAGCACGCCAGCGAACATGTAGAAGGGAAGGAGAGTAAAGTGGAAGAG
GTGGAAGACTCATCGTTGGAAGTAGATATGGCCGAACTTTCCCTCAACATAGTCGTCAAGTTCTCGTCACCGGGCACCCTCAAAATCAAAGGCAAGATCGAAGATAGGGA
CATGTGGCTGAAGACACTCGACATGACCACTGCAGACCGGAAATCGCTCACTCTGTCGGACACGGGGATGAAAAAGTTGTGA
Protein sequenceShow/hide protein sequence
MPRPSASVENNYDQHNRPKLIPKMIETNSIKTITLPNNPSPQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEE
VEDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDMWLKTLDMTTADRKSLTLSDTGMKKL