; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032471 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032471
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionZf-CCHC domain-containing protein
Genome locationchr11:33000164..33001326
RNA-Seq ExpressionLag0032471
SyntenyLag0032471
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032067.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-0450Show/hide
Query:  KLQDSSTAFEKISKKLCGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL
        KLQ  ++A+       CGQQGHLSN CPQR+TL I    EE  EE   +D + E    DEG+QLSCV+
Subjt:  KLQDSSTAFEKISKKLCGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL

KAA0040480.1 hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa]2.8e-0434.34Show/hide
Query:  DQSPFLTALKNSTGWELEIIYQKLSNNKLQDSSTAFEKISKK---LCGQQGHLSNECPQRKTLAI-REVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL
        ++ P  + L+     + +   +K  N     S   + + S K    CGQ GHLSN CPQRKT+A+  E +    E+ + EDE  +++EAD+G+++SCV+
Subjt:  DQSPFLTALKNSTGWELEIIYQKLSNNKLQDSSTAFEKISKK---LCGQQGHLSNECPQRKTLAI-REVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL

TYK27246.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.6e-0448.1Show/hide
Query:  SNNKLQDSSTAFEKISKK----LC---GQQGHLSNECPQRKTLAIREVNEEDLEEQQFE-DEVEEYVEADEGEQLSCVL
        +NNK   + ++  + SK+     C   GQ GHLSN CP+RKT+AI E +E+ +EEQ+ + D  EE +E DEGE+LSCVL
Subjt:  SNNKLQDSSTAFEKISKK----LC---GQQGHLSNECPQRKTLAIREVNEEDLEEQQFE-DEVEEYVEADEGEQLSCVL

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]4.8e-0453.85Show/hide
Query:  CGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL
        CGQ GHLSN CPQRKT+AI E   +  E+    +E  E +EAD+GE++SCV+
Subjt:  CGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL

XP_031745468.1 uncharacterized protein LOC116405837 [Cucumis sativus]6.2e-0453.85Show/hide
Query:  CGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL
        CGQ GHLSN CPQRKT+AI E   +  E+    +E  E +EAD+GE++SCV+
Subjt:  CGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL

TrEMBL top hitse value%identityAlignment
A0A5A7U5B9 CCHC-type domain-containing protein5.1e-0456.6Show/hide
Query:  CGQQGHLSNECPQRKTLAIREVNEEDLEEQQFE-DEVEEYVEADEGEQLSCVL
        CGQ GHLSN CP+RK LAI E +E+ +EEQ+ +  + EE +E ++GE+LSCVL
Subjt:  CGQQGHLSNECPQRKTLAIREVNEEDLEEQQFE-DEVEEYVEADEGEQLSCVL

A0A5A7U9B2 Ty3-gypsy retrotransposon protein5.1e-0454.72Show/hide
Query:  CGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVE-EYVEADEGEQLSCVL
        CGQ GHLSN CPQR+T+A  +  EE +++   EDE + E +EAD+G+ LSCVL
Subjt:  CGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVE-EYVEADEGEQLSCVL

A0A5D3CPS9 Reverse transcriptase1.8e-0450Show/hide
Query:  KLQDSSTAFEKISKKLCGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL
        KLQ  ++A+       CGQQGHLSN CPQR+TL I    EE  EE   +D + E    DEG+QLSCV+
Subjt:  KLQDSSTAFEKISKKLCGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL

A0A5D3DJB8 CCHC-type domain-containing protein1.4e-0434.34Show/hide
Query:  DQSPFLTALKNSTGWELEIIYQKLSNNKLQDSSTAFEKISKK---LCGQQGHLSNECPQRKTLAI-REVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL
        ++ P  + L+     + +   +K  N     S   + + S K    CGQ GHLSN CPQRKT+A+  E +    E+ + EDE  +++EAD+G+++SCV+
Subjt:  DQSPFLTALKNSTGWELEIIYQKLSNNKLQDSSTAFEKISKK---LCGQQGHLSNECPQRKTLAI-REVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL

A0A5D3DU61 Zf-CCHC domain-containing protein7.9e-0548.1Show/hide
Query:  SNNKLQDSSTAFEKISKK----LC---GQQGHLSNECPQRKTLAIREVNEEDLEEQQFE-DEVEEYVEADEGEQLSCVL
        +NNK   + ++  + SK+     C   GQ GHLSN CP+RKT+AI E +E+ +EEQ+ + D  EE +E DEGE+LSCVL
Subjt:  SNNKLQDSSTAFEKISKK----LC---GQQGHLSNECPQRKTLAIREVNEEDLEEQQFE-DEVEEYVEADEGEQLSCVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACTCTTGCAGCTAATCAAGAGAATTTGGGTGATAACAAAATAGCAAATAACCCAAGAAAATCAAGAAATGCAATAGGCCCAAGAAATCATCAAGAAAACATAAT
TGGTGATGCTACTCCCCCAAGAAGATTAGCCAACATTGAATTTGAAAGAATCCCTGAAGCATCCAGTTTTATGACACAAGACTCGGATTCACAGGAGAAGATGAAATTTT
TTGTTACGATCATCAAGATCAACAACCGAGAGCTCCAAGAAGGCAACAAGATGGATATCATGTGCAAACACTCTGAATACCGAATGAAGGATCAAAGTCCATTCTTGACT
GCACTGAAGAATTCCACCGGTTGGGAGCTCGAAATAATTTACCAGAAACTGAGTAACAACAAACTTCAAGATTCGTCAACGGCCTTCGAGAAGATATCAAAGAAATTGTG
TGGCCAACAAGGACATCTTTCAAATGAATGCCCACAAAGAAAAACTTTGGCCATCCGAGAAGTAAATGAGGAAGATTTGGAGGAACAACAATTTGAAGATGAAGTAGAAG
AATATGTAGAAGCCGATGAAGGGGAACAACTATCTTGTGTTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACACTCTTGCAGCTAATCAAGAGAATTTGGGTGATAACAAAATAGCAAATAACCCAAGAAAATCAAGAAATGCAATAGGCCCAAGAAATCATCAAGAAAACATAAT
TGGTGATGCTACTCCCCCAAGAAGATTAGCCAACATTGAATTTGAAAGAATCCCTGAAGCATCCAGTTTTATGACACAAGACTCGGATTCACAGGAGAAGATGAAATTTT
TTGTTACGATCATCAAGATCAACAACCGAGAGCTCCAAGAAGGCAACAAGATGGATATCATGTGCAAACACTCTGAATACCGAATGAAGGATCAAAGTCCATTCTTGACT
GCACTGAAGAATTCCACCGGTTGGGAGCTCGAAATAATTTACCAGAAACTGAGTAACAACAAACTTCAAGATTCGTCAACGGCCTTCGAGAAGATATCAAAGAAATTGTG
TGGCCAACAAGGACATCTTTCAAATGAATGCCCACAAAGAAAAACTTTGGCCATCCGAGAAGTAAATGAGGAAGATTTGGAGGAACAACAATTTGAAGATGAAGTAGAAG
AATATGTAGAAGCCGATGAAGGGGAACAACTATCTTGTGTTCTCTAA
Protein sequenceShow/hide protein sequence
MNTLAANQENLGDNKIANNPRKSRNAIGPRNHQENIIGDATPPRRLANIEFERIPEASSFMTQDSDSQEKMKFFVTIIKINNRELQEGNKMDIMCKHSEYRMKDQSPFLT
ALKNSTGWELEIIYQKLSNNKLQDSSTAFEKISKKLCGQQGHLSNECPQRKTLAIREVNEEDLEEQQFEDEVEEYVEADEGEQLSCVL