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Lag0032476 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032476
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:33035507..33036007
RNA-Seq ExpressionLag0032476
SyntenyLag0032476
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG57115.1 hypothetical protein EZV62_018428 [Acer yangbiense]5.4e-0931.08Show/hide
Query:  QQDDLNLLCVGAWTIWNDRNKIVH-NLPVPTIEIKCDWIFAYLEEFQKV----QVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVIRD
        +++D  L+CV  W IW   N  VH ++ +P  ++   W   ++ +F+      +V  G  S     ++    R  +  MNTDAA D+   ++G G++IRD
Subjt:  QQDDLNLLCVGAWTIWNDRNKIVH-NLPVPTIEIKCDWIFAYLEEFQKV----QVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVIRD

Query:  KQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDS
          G++ A+ S+    F +P+ AEA A+   L+F RD  L   TV+ D+
Subjt:  KQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDS

XP_019191714.1 PREDICTED: uncharacterized protein LOC109186242 [Ipomoea nil]2.1e-0832.19Show/hide
Query:  QDDLNLLCVGAWTIWNDRN-KIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIARREETI--MNTDAAYDAINRKIGIGIVIRDKQG
        +D L  + V  W IW  RN KI +N  + + E        YL+++++  + S   +      Q   ++ +E    +N DAA D+IN K+G G VIRD+ G
Subjt:  QDDLNLLCVGAWTIWNDRN-KIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIARREETI--MNTDAAYDAINRKIGIGIVIRDKQG

Query:  NLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSL
           AA         +P  AEA A+ E L + ++++L  ++V TDSL
Subjt:  NLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.9e-1032.65Show/hide
Query:  DLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIA--RREETI---MNTDAAYDAINRKIGIGIVIRDKQG
        DLNL  +  W IWNDRN ++H   V  +E KC+W+  +L+   + Q+ S  +    +  + ++   R   ++   +NTDAA          G +IRD   
Subjt:  DLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIA--RREETI---MNTDAAYDAINRKIGIGIVIRDKQG

Query:  NLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLL
        +L AA S       +PL AE   +LE L+FA   +   + V +DSLL
Subjt:  NLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLL

XP_030479177.1 uncharacterized protein LOC115696415 [Cannabis sativa]5.4e-0931.54Show/hide
Query:  FCNYQQDDLNLLCVGAWTIWNDRNKIVHN-LPVPTIEIKCDWIFAYLEEF--QKVQVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVI
        F    ++D+ +L    W +WN RN IV+N   +P  E+  DW   Y  +F   + Q  +G+  +  +   T I       + TDAA D++NRK  IG+V+
Subjt:  FCNYQQDDLNLLCVGAWTIWNDRNKIVHN-LPVPTIEIKCDWIFAYLEEF--QKVQVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVI

Query:  RDKQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTD
         D    +KA  S        P  AEA A+ + +Q+A+ + L    +LTD
Subjt:  RDKQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTD

XP_030930858.1 uncharacterized protein LOC115956689 [Quercus lobata]3.2e-0935.97Show/hide
Query:  AWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQ----KVQVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVIRDKQGNLKAAHSKS
        AW IW++RN+I       +  +   W   YLEEFQ    KVQ+ S  +   ++     +       +N DAA     R +GIG+VIRD  G+++AA SK 
Subjt:  AWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQ----KVQVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVIRDKQGNLKAAHSKS

Query:  SQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLLL
         +    PL  EA A+ E L+FA D   +  T   DSLL+
Subjt:  SQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLLL

TrEMBL top hitse value%identityAlignment
A0A5C7HK03 RNase H domain-containing protein2.6e-0931.08Show/hide
Query:  QQDDLNLLCVGAWTIWNDRNKIVH-NLPVPTIEIKCDWIFAYLEEFQKV----QVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVIRD
        +++D  L+CV  W IW   N  VH ++ +P  ++   W   ++ +F+      +V  G  S     ++    R  +  MNTDAA D+   ++G G++IRD
Subjt:  QQDDLNLLCVGAWTIWNDRNKIVH-NLPVPTIEIKCDWIFAYLEEFQKV----QVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVIRD

Query:  KQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDS
          G++ A+ S+    F +P+ AEA A+   L+F RD  L   TV+ D+
Subjt:  KQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDS

A0A6J1DX30 uncharacterized protein LOC1110248742.4e-1032.65Show/hide
Query:  DLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIA--RREETI---MNTDAAYDAINRKIGIGIVIRDKQG
        DLNL  +  W IWNDRN ++H   V  +E KC+W+  +L+   + Q+ S  +    +  + ++   R   ++   +NTDAA          G +IRD   
Subjt:  DLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIA--RREETI---MNTDAAYDAINRKIGIGIVIRDKQG

Query:  NLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLL
        +L AA S       +PL AE   +LE L+FA   +   + V +DSLL
Subjt:  NLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLL

A0A803NM27 Uncharacterized protein2.0e-0931.82Show/hide
Query:  YQQDDLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIARREET-------IMNTDAAYDAINRKIGIGIV
        Y + +L ++    W+IW+DRN ++H        +      ++L  FQ  Q  S    +  A   T  A R  T        +N DAA+D   ++IG G +
Subjt:  YQQDDLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIARREET-------IMNTDAAYDAINRKIGIGIV

Query:  IRDKQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLLL
        IRD  GN+KAA S        P   EA  +   L++AR ++ K   V TDSL+L
Subjt:  IRDKQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLLL

A0A803P2U6 Uncharacterized protein1.2e-0932.17Show/hide
Query:  QDDLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEF--QKVQVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVIRDKQGN
        ++D+ +L    W +WN RN IVHN    + +   DW   Y  +F   + Q  SG+ S+ ++     I       + TDAA D++N+K  IG+V+ D    
Subjt:  QDDLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEF--QKVQVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGIVIRDKQGN

Query:  LKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTD
        +KA  S        P  AEA AV + +Q+A+ + L    +LTD
Subjt:  LKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTD

A0A803Q8J4 Uncharacterized protein4.5e-0931.37Show/hide
Query:  NYQQDDLNLLCVGAWTIWNDRNKIVH--NLPVPT-IEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIARREETI--MNTDAAYDAINRKIGIGIVI
        NY + +L  +    W+IW+DRN ++H  +   PT I  K        +  Q++ + +G +           +    T   +N DAA+D    KIG G +I
Subjt:  NYQQDDLNLLCVGAWTIWNDRNKIVH--NLPVPT-IEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIARREETI--MNTDAAYDAINRKIGIGIVI

Query:  RDKQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLLL
        RD  GN+KAA S        P   EA  +   L++AR ++ K   V TDSL+L
Subjt:  RDKQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCAGAGGGTAGAATCGACAACAAGGATCGATGCCTCCGCTTTTGTAACTATCAACAAGATGATTTGAATCTCTTATGTGTGGGAGCATGGACTATCTGGAATGA
TAGGAACAAAATTGTTCATAATCTACCAGTACCCACTATTGAAATTAAGTGTGACTGGATTTTTGCTTATCTGGAGGAGTTTCAAAAGGTTCAAGTGGCAAGCGGGGCCA
CTTCTTCACTGTATGCTGAATTTCAGACGCTGATTGCTAGACGGGAGGAGACCATTATGAATACTGATGCGGCTTATGACGCGATTAATCGAAAGATTGGCATTGGGATA
GTGATCCGGGATAAGCAGGGCAATCTCAAGGCGGCCCACTCAAAATCTTCTCAGGTTTTTACCACTCCGCTTTGTGCAGAAGCAGCTGCAGTCCTTGAAAGACTTCAGTT
TGCTAGAGACATGGATCTGAAATGTATTACGGTCTTGACAGATTCCCTCTTGCTAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGCCAGAGGGTAGAATCGACAACAAGGATCGATGCCTCCGCTTTTGTAACTATCAACAAGATGATTTGAATCTCTTATGTGTGGGAGCATGGACTATCTGGAATGA
TAGGAACAAAATTGTTCATAATCTACCAGTACCCACTATTGAAATTAAGTGTGACTGGATTTTTGCTTATCTGGAGGAGTTTCAAAAGGTTCAAGTGGCAAGCGGGGCCA
CTTCTTCACTGTATGCTGAATTTCAGACGCTGATTGCTAGACGGGAGGAGACCATTATGAATACTGATGCGGCTTATGACGCGATTAATCGAAAGATTGGCATTGGGATA
GTGATCCGGGATAAGCAGGGCAATCTCAAGGCGGCCCACTCAAAATCTTCTCAGGTTTTTACCACTCCGCTTTGTGCAGAAGCAGCTGCAGTCCTTGAAAGACTTCAGTT
TGCTAGAGACATGGATCTGAAATGTATTACGGTCTTGACAGATTCCCTCTTGCTAGAATAG
Protein sequenceShow/hide protein sequence
MLPEGRIDNKDRCLRFCNYQQDDLNLLCVGAWTIWNDRNKIVHNLPVPTIEIKCDWIFAYLEEFQKVQVASGATSSLYAEFQTLIARREETIMNTDAAYDAINRKIGIGI
VIRDKQGNLKAAHSKSSQVFTTPLCAEAAAVLERLQFARDMDLKCITVLTDSLLLE