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Lag0032484 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032484
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:33187555..33188151
RNA-Seq ExpressionLag0032484
SyntenyLag0032484
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010687479.1 PREDICTED: uncharacterized protein LOC104901585 [Beta vulgaris subsp. vulgaris]3.2e-1631.89Show/hide
Query:  LWWSIWSAQNKIRLKGADRP-CGLVEWANEYVLAFREVGRRSREGDR-ETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLSTTF
        L W+IW  QN    +G  R    +VE A   VL + +V   ++EGD+   V  + V WKAPR   YK+N D ++ +D ++ G G + RD  G V+ +   
Subjt:  LWWSIWSAQNKIRLKGADRP-CGLVEWANEYVLAFREVGRRSREGDR-ETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLSTTF

Query:  TQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH
               VD+AE   A + L++  +      +LE D+ ++F  L+R + +A     I+ D    +     V F  TRR+GN+ AH
Subjt:  TQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]2.6e-1829.91Show/hide
Query:  KEVVQGESFKKLVVLWWSIWSAQ-----NKIRLKGADRPCGLVEWANEYVLAFR-----------EVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDV
        ++++  + F++LVV  WS+W+ +     NK R++  D    L  W + Y+  F+           +V +  ++  +    +   +W       +K+  D 
Subjt:  KEVVQGESFKKLVVLWWSIWSAQ-----NKIRLKGADRPCGLVEWANEYVLAFR-----------EVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDV

Query:  SLLSDSSRAGFG-IIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQV
        S  S    AG G II RD  GQV+ S T   ++V +VD AE  AAV+ L +  +T +   +LETDS R++ L  R++E       II      +   LQV
Subjt:  SLLSDSSRAGFG-IIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQV

Query:  LFDFTRREGNQAAH
         + FT+R GN  AH
Subjt:  LFDFTRREGNQAAH

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.4e-2442.86Show/hide
Query:  LVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVA
        LVEWAN+YV+ FRE       G R T   E V+W  P    YK+N D S L+    AG GII R+  GQVM S T   +N+++VDMAE   AV+ L+L +
Subjt:  LVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVA

Query:  DTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH
           +   ILETDS R+F L ++  ED  +   I+  A       L   F+F +REGN+AAH
Subjt:  DTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH

XP_030936105.1 uncharacterized protein LOC115961232 [Quercus lobata]1.1e-1630.05Show/hide
Query:  MKEVVQGESFKKLVVLW-WSIWSAQNKIRLKGADRPC----GLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAG
        M  V++ +   +L  ++ WSIW+ +N++R     +PC     L + AN+  L F+ V   +    R+    ++V W  P  + +K+N+D ++ +D++R+G
Subjt:  MKEVVQGESFKKLVVLW-WSIWSAQNKIRLKGADRPC----GLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAG

Query:  FGIIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQ
         G++ R+  G V+ S     +        E  AA ++LEL AD  L   ILE DS+ V Q L  E        ++I DA        +V +  T+REGN+
Subjt:  FGIIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQ

Query:  AAH
         AH
Subjt:  AAH

XP_030970512.1 uncharacterized protein LOC115990884 [Quercus lobata]1.9e-1630.05Show/hide
Query:  MKEVVQGESFKKLVVLW-WSIWSAQNKIRLKGADRPC----GLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAG
        M  V++ +   +L  ++ WSIW+ +N++R     +PC     L + AN+  L F+ V   +    R+    ++V W  P  + +K+N+D ++ +D++R+G
Subjt:  MKEVVQGESFKKLVVLW-WSIWSAQNKIRLKGADRPC----GLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAG

Query:  FGIIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQ
         G++ R+  G V+ S     +        E  AA ++LEL AD  L   ILE DS+ V Q L  E        ++I DA        +V +  T+REGN+
Subjt:  FGIIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQ

Query:  AAH
         AH
Subjt:  AAH

TrEMBL top hitse value%identityAlignment
A0A2N9EVK9 Reverse transcriptase domain-containing protein7.7e-1628.65Show/hide
Query:  VVLWWSIWSAQNKIRLKGADRPCGLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLSTTF
        +++ W++W  +NKIR+     P   V    + +    E  R +     +      V WK PR   YK+N+D ++  +++ AG G+I RD MG VM S T 
Subjt:  VVLWWSIWSAQNKIRLKGADRPCGLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLSTTF

Query:  TQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH
              +V   E +A  +S++   +  +  A  E DS+ +   LN  R       ++IADA M         F   +R+GN+ AH
Subjt:  TQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH

A0A6J1CDQ4 uncharacterized protein LOC1110105331.3e-1829.91Show/hide
Query:  KEVVQGESFKKLVVLWWSIWSAQ-----NKIRLKGADRPCGLVEWANEYVLAFR-----------EVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDV
        ++++  + F++LVV  WS+W+ +     NK R++  D    L  W + Y+  F+           +V +  ++  +    +   +W       +K+  D 
Subjt:  KEVVQGESFKKLVVLWWSIWSAQ-----NKIRLKGADRPCGLVEWANEYVLAFR-----------EVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDV

Query:  SLLSDSSRAGFG-IIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQV
        S  S    AG G II RD  GQV+ S T   ++V +VD AE  AAV+ L +  +T +   +LETDS R++ L  R++E       II      +   LQV
Subjt:  SLLSDSSRAGFG-IIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQV

Query:  LFDFTRREGNQAAH
         + FT+R GN  AH
Subjt:  LFDFTRREGNQAAH

A0A6J1CIF1 uncharacterized protein LOC1110112376.9e-2542.86Show/hide
Query:  LVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVA
        LVEWAN+YV+ FRE       G R T   E V+W  P    YK+N D S L+    AG GII R+  GQVM S T   +N+++VDMAE   AV+ L+L +
Subjt:  LVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVA

Query:  DTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH
           +   ILETDS R+F L ++  ED  +   I+  A       L   F+F +REGN+AAH
Subjt:  DTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH

A0A6J1DBJ7 uncharacterized protein LOC1110189731.3e-1529.35Show/hide
Query:  EVVQGESFKKLVVLWWSIWSAQNKI--RLKGADRPCGLVEWANEYVLAFREVGRRSREGDRETVCR--ERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGI
        ++V  +    +VVL W+IW+A+N+             LV W+  Y+  ++   R S       VCR     +W+ P     KVN D +   +S  AG G+
Subjt:  EVVQGESFKKLVVLWWSIWSAQNKI--RLKGADRPCGLVEWANEYVLAFREVGRRSREGDRETVCR--ERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGI

Query:  IFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQ-VLFDFTRREGNQAA
        I RD  G V L+         +VD  EGFA  + + L  +       +ETDS R+F LL  +  D  ++ ++ +   + + +  + V F FT R GN  A
Subjt:  IFRDPMGQVMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQ-VLFDFTRREGNQAA

Query:  H
        H
Subjt:  H

A0A7N2KPS3 Reverse transcriptase domain-containing protein1.0e-1529.17Show/hide
Query:  GESFKKLVVLWWSIWSAQNKIRLKGADRPCGLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQ
        G     LV + W+IW  +N++RL        +++ A + +LA+ +  R  R     +    RV W  P +   K+NFD +   D ++AG GI+ RD  GQ
Subjt:  GESFKKLVVLWWSIWSAQNKIRLKGADRPCGLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQ

Query:  VMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH
        VM S +       + D+ E  AA K++   A+      +LE DS  + + L +E +       I+A A  +      + F   RR GN  AH
Subjt:  VMLSTTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGTGGTACAGGGTGAGAGTTTTAAGAAACTGGTGGTGTTATGGTGGTCAATATGGTCGGCCCAAAACAAAATTCGACTCAAAGGAGCTGATAGACCGTGTGG
GCTGGTGGAATGGGCGAATGAGTATGTGCTGGCTTTCCGTGAGGTTGGGAGGAGGAGTAGGGAAGGGGATCGAGAGACTGTCTGTCGTGAGAGAGTAGTGTGGAAGGCTC
CGAGAAACGACTGGTATAAGGTGAATTTTGATGTCTCGCTCCTGTCTGACTCATCAAGGGCAGGCTTCGGGATAATTTTTCGAGACCCTATGGGCCAAGTGATGCTGTCG
ACGACCTTCACTCAGGATAATGTGAGAAATGTGGACATGGCAGAAGGATTTGCAGCGGTGAAGAGTCTGGAGTTGGTGGCAGATACGGATTTGGGTCTAGCAATTCTTGA
GACGGACTCAAGAAGAGTTTTCCAGCTTCTTAATCGGGAACGTGAAGATGCCTTTGATCTGAGCATGATTATTGCAGATGCATTGATGGCGATTCCGGCTGGTCTACAGG
TACTGTTCGATTTTACTCGCCGTGAAGGGAACCAAGCGGCACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGTGGTACAGGGTGAGAGTTTTAAGAAACTGGTGGTGTTATGGTGGTCAATATGGTCGGCCCAAAACAAAATTCGACTCAAAGGAGCTGATAGACCGTGTGG
GCTGGTGGAATGGGCGAATGAGTATGTGCTGGCTTTCCGTGAGGTTGGGAGGAGGAGTAGGGAAGGGGATCGAGAGACTGTCTGTCGTGAGAGAGTAGTGTGGAAGGCTC
CGAGAAACGACTGGTATAAGGTGAATTTTGATGTCTCGCTCCTGTCTGACTCATCAAGGGCAGGCTTCGGGATAATTTTTCGAGACCCTATGGGCCAAGTGATGCTGTCG
ACGACCTTCACTCAGGATAATGTGAGAAATGTGGACATGGCAGAAGGATTTGCAGCGGTGAAGAGTCTGGAGTTGGTGGCAGATACGGATTTGGGTCTAGCAATTCTTGA
GACGGACTCAAGAAGAGTTTTCCAGCTTCTTAATCGGGAACGTGAAGATGCCTTTGATCTGAGCATGATTATTGCAGATGCATTGATGGCGATTCCGGCTGGTCTACAGG
TACTGTTCGATTTTACTCGCCGTGAAGGGAACCAAGCGGCACACTGA
Protein sequenceShow/hide protein sequence
MKEVVQGESFKKLVVLWWSIWSAQNKIRLKGADRPCGLVEWANEYVLAFREVGRRSREGDRETVCRERVVWKAPRNDWYKVNFDVSLLSDSSRAGFGIIFRDPMGQVMLS
TTFTQDNVRNVDMAEGFAAVKSLELVADTDLGLAILETDSRRVFQLLNREREDAFDLSMIIADALMAIPAGLQVLFDFTRREGNQAAH