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Lag0032518 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032518
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr11:33934759..33935783
RNA-Seq ExpressionLag0032518
SyntenyLag0032518
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]2.7e-1932.31Show/hide
Query:  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVAQTQI------------------------------------
        PP  PL    P++  P  IKL   NYL+WKNQLLN IIA  +E FI+G+ P PP+F D A+  +                                    
Subjt:  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVAQTQI------------------------------------

Query:  -------------------------------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAY
                                                   K++ N  + +GEP+S +DHL Y+  GL  EYN FVTSI  R D   L ++ SLLL+Y
Subjt:  -------------------------------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAY

Query:  ETRLEKQSSVDNLNLVQENQAHLSVNKIP
        E RLE Q++   L+ +Q N AHL++NK P
Subjt:  ETRLEKQSSVDNLNLVQENQAHLSVNKIP

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]8.9e-2361.7Show/hide
Query:  LDVAQ--TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNK
        L V+Q   +IK++  K S+IGEP+S +DH+ YI+EGLGIEYN FVTSIQNR+D  +L DVR+LLLAY+ RLEKQ+SVD LN+VQ N A+L +N+
Subjt:  LDVAQ--TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNK

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]1.0e-3138.91Show/hide
Query:  PSFF--PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVAQTQ-------------------------------
        P+F   PP      P+PTL  PLN+KL+D+N+LLWKNQLLN +IA  +  +++GT   PP+FLD  Q Q                               
Subjt:  PSFF--PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVAQTQ-------------------------------

Query:  ------------------------------------------------IKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVR
                                                        IK++A+KF+ +GEPLSYRDHL ++L+GLG EYN FVTSI NR D PSL DVR
Subjt:  ------------------------------------------------IKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVR

Query:  SLLLAYETRLEKQSSVDNLNLVQENQAHLSV---NKIPP
        SLLLAYE RL+KQ++VD LN+ Q N  +LS+   +K PP
Subjt:  SLLLAYETRLEKQSSVDNLNLVQENQAHLSV---NKIPP

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]2.5e-2568.24Show/hide
Query:  QIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVN
        QIKDV + F+ IGEPLSYRDHL YILEGLG EYNPFV+SI NR ++PS+ADVR+LL+ Y++RLEKQ++ D+L L+Q N AHLS+N
Subjt:  QIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVN

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]4.6e-1961.9Show/hide
Query:  TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLS
        +QIKDVA+KFS +GE +SYRDHL +IL+GLG EYN FVTSIQN  D  S+ DV SLLL+YE +LEKQ+++D+LN+ Q   + LS
Subjt:  TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLS

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein1.3e-1932.31Show/hide
Query:  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVAQTQI------------------------------------
        PP  PL    P++  P  IKL   NYL+WKNQLLN IIA  +E FI+G+ P PP+F D A+  +                                    
Subjt:  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVAQTQI------------------------------------

Query:  -------------------------------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAY
                                                   K++ N  + +GEP+S +DHL Y+  GL  EYN FVTSI  R D   L ++ SLLL+Y
Subjt:  -------------------------------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAY

Query:  ETRLEKQSSVDNLNLVQENQAHLSVNKIP
        E RLE Q++   L+ +Q N AHL++NK P
Subjt:  ETRLEKQSSVDNLNLVQENQAHLSVNKIP

A0A438FTV3 Uncharacterized protein2.9e-1937.22Show/hide
Query:  PPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGTPAPPKFLDVA--------------------------------QT-------------QIKDVANK
        P   +KL + NYL+WKNQLLN II   +  FI+ + + P  +  +                                QT             ++K + N 
Subjt:  PPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGTPAPPKFLDVA--------------------------------QT-------------QIKDVANK

Query:  FSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNKIP
         + IGEP+S +DHL Y+  GL  EYNPFVTSIQNR+DQP++  + SLLL+Y+ RLE+Q+ V +LN  Q + AHL  NK P
Subjt:  FSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNKIP

A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE11.2e-1733.91Show/hide
Query:  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIN-GTPAPPKFLDVAQTQI------------------------------------
        P    +T P P+L+  L+IKL ++N LL K+QLLN IIA  +E FI+    +PPK+LD A  Q+                                    
Subjt:  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIN-GTPAPPKFLDVAQTQI------------------------------------

Query:  -------------------------------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAY
                                                   K V ++F+TIGEPLSYRD L  ILEGL  EY+ FVTSI NR+D+PSL +V SLL  Y
Subjt:  -------------------------------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAY

Query:  ETRLEKQSSVDNLNLVQENQAHLSVNKIPP
        E RL ++S   NLN  Q N      N   P
Subjt:  ETRLEKQSSVDNLNLVQENQAHLSVNKIPP

A0A6J1D6N7 uncharacterized protein LOC1110174384.3e-2361.7Show/hide
Query:  LDVAQ--TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNK
        L V+Q   +IK++  K S+IGEP+S +DH+ YI+EGLGIEYN FVTSIQNR+D  +L DVR+LLLAY+ RLEKQ+SVD LN+VQ N A+L +N+
Subjt:  LDVAQ--TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNK

A0A6J1DQX7 uncharacterized protein LOC1110223155.1e-3238.91Show/hide
Query:  PSFF--PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVAQTQ-------------------------------
        P+F   PP      P+PTL  PLN+KL+D+N+LLWKNQLLN +IA  +  +++GT   PP+FLD  Q Q                               
Subjt:  PSFF--PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVAQTQ-------------------------------

Query:  ------------------------------------------------IKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVR
                                                        IK++A+KF+ +GEPLSYRDHL ++L+GLG EYN FVTSI NR D PSL DVR
Subjt:  ------------------------------------------------IKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVR

Query:  SLLLAYETRLEKQSSVDNLNLVQENQAHLSV---NKIPP
        SLLLAYE RL+KQ++VD LN+ Q N  +LS+   +K PP
Subjt:  SLLLAYETRLEKQSSVDNLNLVQENQAHLSV---NKIPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAACATCGAGCACTTCATCAGTTGGAAATGACCGGGTACCGGCTTTGCCTTCTTCCTCCACCATCACTCTCCAGTCACAACACCTGTTACAACCCACCAAATT
CCAATATCTGTCGACGTCCCCTTCATCTCTACCTTTCTTCCCCGCCTTGAACCTTGCTCCCTCCTTTTTCCCTCCGACTCAGCCGTTAACGACACCCTATCCGACTCTCA
CTCCTCCGCTCAACATCAAGCTCTCAGATTCTAATTATCTCTTATGGAAAAACCAACTGCTCAACCATATTATTGCTTTTGACATGGAGAGTTTCATCAATGGGACGCCA
GCTCCACCGAAATTTCTGGATGTAGCTCAAACCCAGATTAAGGATGTCGCTAACAAATTTTCTACAATTGGTGAGCCCTTGTCTTACCGTGATCACTTAGGTTACATTTT
AGAGGGACTAGGAATTGAATATAATCCTTTTGTTACTTCGATTCAAAATAGGAATGATCAACCTTCTCTAGCTGATGTTCGTAGCCTTCTTCTTGCTTACGAAACCCGTC
TTGAAAAACAATCCTCTGTCGACAACCTTAACTTAGTTCAGGAAAATCAAGCCCATCTTTCTGTGAACAAAATACCTCCAAGCGTTTCCAGAAACCTTAGCATAACTCAA
AGCCTAATAACCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAACATCGAGCACTTCATCAGTTGGAAATGACCGGGTACCGGCTTTGCCTTCTTCCTCCACCATCACTCTCCAGTCACAACACCTGTTACAACCCACCAAATT
CCAATATCTGTCGACGTCCCCTTCATCTCTACCTTTCTTCCCCGCCTTGAACCTTGCTCCCTCCTTTTTCCCTCCGACTCAGCCGTTAACGACACCCTATCCGACTCTCA
CTCCTCCGCTCAACATCAAGCTCTCAGATTCTAATTATCTCTTATGGAAAAACCAACTGCTCAACCATATTATTGCTTTTGACATGGAGAGTTTCATCAATGGGACGCCA
GCTCCACCGAAATTTCTGGATGTAGCTCAAACCCAGATTAAGGATGTCGCTAACAAATTTTCTACAATTGGTGAGCCCTTGTCTTACCGTGATCACTTAGGTTACATTTT
AGAGGGACTAGGAATTGAATATAATCCTTTTGTTACTTCGATTCAAAATAGGAATGATCAACCTTCTCTAGCTGATGTTCGTAGCCTTCTTCTTGCTTACGAAACCCGTC
TTGAAAAACAATCCTCTGTCGACAACCTTAACTTAGTTCAGGAAAATCAAGCCCATCTTTCTGTGAACAAAATACCTCCAAGCGTTTCCAGAAACCTTAGCATAACTCAA
AGCCTAATAACCAACTGA
Protein sequenceShow/hide protein sequence
MASTSSTSSVGNDRVPALPSSSTITLQSQHLLQPTKFQYLSTSPSSLPFFPALNLAPSFFPPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGTP
APPKFLDVAQTQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNKIPPSVSRNLSITQ
SLITN