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Lag0032527 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032527
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:34045853..34046485
RNA-Seq ExpressionLag0032527
SyntenyLag0032527
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]8.9e-1730.99Show/hide
Query:  RPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLN
        RP  V  +    W+  P G  K++CDA+W  +T  GGVGW++RD +G ++ AG K   RG     +EA +I E L A +    S + VESDSLQV+R++ 
Subjt:  RPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLN

Query:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADI
         E      +   + + + L+   +     +  R  N  AH +A   S       W   +P W+  +  +D+
Subjt:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADI

CAB4279811.1 unnamed protein product [Prunus armeniaca]5.8e-1629.82Show/hide
Query:  RPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLN
        RP  +  +    W+ +P G  K++CDA+W  +T  GGVGW++RD  G ++ AG K   RG     +EA +I E L A +    S + VESDSLQ++R+L 
Subjt:  RPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLN

Query:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADI
         E      +   + + + L+   +     +  R  N  AH +    S       W   +P W+  +  +D+
Subjt:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.8e-2138.13Show/hide
Query:  QWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLNDEDEDFTKLTL
        QWKP    + KL+ +A+W   T  GG+GW+LRD  G ++ A  + +     I++LE M+ICEGL A+  +   P+ +ESDSL+ + LL+ + +D T++  
Subjt:  QWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLNDEDEDFTKLTL

Query:  FIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEED
         ++E   ++   ++ ++ HISRE N +AH LA RA E D
Subjt:  FIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEED

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.4e-2341.03Show/hide
Query:  NTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLS-DSFSPVSVESDSLQVVRLLNDEDEDFT
        N  +W+P P     L+ DASW++ T +GG+GW++R W+G I++AG + VE    +  LEA +I EGL  L +     P+ +E+DS +V  LLN + ED T
Subjt:  NTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLS-DSFSPVSVESDSLQVVRLLNDEDEDFT

Query:  KLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL
        K    ++E  NL    ++ A + + RE N  AHSLA RAS   +  IW   FPNWL
Subjt:  KLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.5e-1935.06Show/hide
Query:  VANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVS--------VESDSLQVV
        + +    +WKP    + KL+ DA+W   T  GG+GW+LRD  G ++ A  + +     I++LE M+ICEGL A+  +   P+         +ESDSL+ +
Subjt:  VANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVS--------VESDSLQVV

Query:  RLLNDEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEED
         LL+ + +D T++   ++E   ++   K+ ++ HISRE N +AH LA RA E D
Subjt:  RLLNDEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEED

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.8e-2138.13Show/hide
Query:  QWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLNDEDEDFTKLTL
        QWKP    + KL+ +A+W   T  GG+GW+LRD  G ++ A  + +     I++LE M+ICEGL A+  +   P+ +ESDSL+ + LL+ + +D T++  
Subjt:  QWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLNDEDEDFTKLTL

Query:  FIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEED
         ++E   ++   ++ ++ HISRE N +AH LA RA E D
Subjt:  FIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEED

A0A6J1DNV9 uncharacterized protein LOC1110224033.1e-2341.03Show/hide
Query:  NTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLS-DSFSPVSVESDSLQVVRLLNDEDEDFT
        N  +W+P P     L+ DASW++ T +GG+GW++R W+G I++AG + VE    +  LEA +I EGL  L +     P+ +E+DS +V  LLN + ED T
Subjt:  NTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLS-DSFSPVSVESDSLQVVRLLNDEDEDFT

Query:  KLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL
        K    ++E  NL    ++ A + + RE N  AHSLA RAS   +  IW   FPNWL
Subjt:  KLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL

A0A6J1DSV1 uncharacterized protein LOC1110236081.2e-1935.06Show/hide
Query:  VANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVS--------VESDSLQVV
        + +    +WKP    + KL+ DA+W   T  GG+GW+LRD  G ++ A  + +     I++LE M+ICEGL A+  +   P+         +ESDSL+ +
Subjt:  VANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVS--------VESDSLQVV

Query:  RLLNDEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEED
         LL+ + +D T++   ++E   ++   K+ ++ HISRE N +AH LA RA E D
Subjt:  RLLNDEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEED

A0A6J5UAY2 Reverse transcriptase domain-containing protein4.3e-1730.99Show/hide
Query:  RPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLN
        RP  V  +    W+  P G  K++CDA+W  +T  GGVGW++RD +G ++ AG K   RG     +EA +I E L A +    S + VESDSLQV+R++ 
Subjt:  RPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLN

Query:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADI
         E      +   + + + L+   +     +  R  N  AH +A   S       W   +P W+  +  +D+
Subjt:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADI

A0A6J5UV01 Reverse transcriptase domain-containing protein2.8e-1629.82Show/hide
Query:  RPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLN
        RP  +  +    W+ +P G  K++CDA+W  +T  GGVGW++RD  G ++ AG K   RG     +EA +I E L A +    S + VESDSLQ++R+L 
Subjt:  RPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLN

Query:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADI
         E      +   + + + L+   +     +  R  N  AH +    S       W   +P W+  +  +D+
Subjt:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein2.2e-0525Show/hide
Query:  VPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLNDEDEDFTKLTLFIKE
        VP    K + DAS +E  +  G+GWL+R+  GT+L  G    +        E  ++   ++A  +  ++ V  E D+  V RL+N +  D  +L  ++  
Subjt:  VPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLNDEDEDFTKLTLFIKE

Query:  AQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL
         ++ I     T      RE N  A +L  +A +       ++  P++L
Subjt:  AQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL

AT2G04420.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0627.61Show/hide
Query:  CNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEA--MSICEGLEALLSDSFSPVSVESDSLQVVRLLN
        CN       +W+  P G  K + D S+N +T Q   GWL+RD  G     G      G   + LE+   ++   ++   S  +  V  E DS QV  LLN
Subjt:  CNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEA--MSICEGLEALLSDSFSPVSVESDSLQVVRLLN

Query:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL
         +   F     +I+EA +     +    S   R +N  A  LA     +D   I++   PN++
Subjt:  DEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.8e-0723.75Show/hide
Query:  NVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLNDED
        N       +W P      K + DAS +E+    G+GW+LR+  GT++  G    +        E  ++   ++A        V  E D+  + R++N + 
Subjt:  NVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVVRLLNDED

Query:  EDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL
         +  +L  F+   Q+ I   +    S   RE N  A  LA +A +E+     +   P +L
Subjt:  EDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAGAAGACACACACCTTAGATTGATGATCCAACAACGACCCTGCAACGTTGCTAATCAAAATACTCCTCAGTGGAAACCGGTTCCGGAAGGCGCTAGGAAGCT
TAGCTGCGACGCTAGCTGGAACGAAAAGACGATGCAGGGAGGGGTAGGATGGCTGCTTCGCGACTGGAATGGAACGATTCTAATGGCGGGTTACAAATCAGTCGAGCGTG
GATGGAAGATCTCGTGGTTGGAGGCGATGTCCATCTGTGAGGGGCTGGAGGCGCTTCTCTCGGATTCCTTCTCTCCCGTGAGTGTCGAAAGTGACTCCCTACAAGTGGTA
CGACTGTTAAATGATGAGGATGAGGATTTTACTAAACTGACTCTTTTCATTAAAGAAGCCCAAAATCTCATATCCCTAAGGAAGGTTACAGCTATCTCACATATATCTAG
AGAGCATAACTTTATGGCCCATTCTTTGGCCTGTCGGGCTAGTGAGGAAGATGATTACAAAATCTGGTATTCTGAGTTCCCTAATTGGCTTCTTTCTTTAAATGAGGCTG
ATATAGGAGGTGTAAATCACGCTAGTGGGGGTTCCTGTCCCACTAGTGAAATATCTTCCGTTGTTTTTGCTTCTTCTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAGAAGACACACACCTTAGATTGATGATCCAACAACGACCCTGCAACGTTGCTAATCAAAATACTCCTCAGTGGAAACCGGTTCCGGAAGGCGCTAGGAAGCT
TAGCTGCGACGCTAGCTGGAACGAAAAGACGATGCAGGGAGGGGTAGGATGGCTGCTTCGCGACTGGAATGGAACGATTCTAATGGCGGGTTACAAATCAGTCGAGCGTG
GATGGAAGATCTCGTGGTTGGAGGCGATGTCCATCTGTGAGGGGCTGGAGGCGCTTCTCTCGGATTCCTTCTCTCCCGTGAGTGTCGAAAGTGACTCCCTACAAGTGGTA
CGACTGTTAAATGATGAGGATGAGGATTTTACTAAACTGACTCTTTTCATTAAAGAAGCCCAAAATCTCATATCCCTAAGGAAGGTTACAGCTATCTCACATATATCTAG
AGAGCATAACTTTATGGCCCATTCTTTGGCCTGTCGGGCTAGTGAGGAAGATGATTACAAAATCTGGTATTCTGAGTTCCCTAATTGGCTTCTTTCTTTAAATGAGGCTG
ATATAGGAGGTGTAAATCACGCTAGTGGGGGTTCCTGTCCCACTAGTGAAATATCTTCCGTTGTTTTTGCTTCTTCTCAATGA
Protein sequenceShow/hide protein sequence
MDKEDTHLRLMIQQRPCNVANQNTPQWKPVPEGARKLSCDASWNEKTMQGGVGWLLRDWNGTILMAGYKSVERGWKISWLEAMSICEGLEALLSDSFSPVSVESDSLQVV
RLLNDEDEDFTKLTLFIKEAQNLISLRKVTAISHISREHNFMAHSLACRASEEDDYKIWYSEFPNWLLSLNEADIGGVNHASGGSCPTSEISSVVFASSQ