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Lag0032543 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032543
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr11:34349099..34349783
RNA-Seq ExpressionLag0032543
SyntenyLag0032543
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU49029.1 hypothetical protein TSUD_406820 [Trifolium subterraneum]3.1e-0650.94Show/hide
Query:  YEILPEFCYRCGRVGHVIRECEEINNGPEEN--NIQE-ELLFGDWMKVTPLFE
        YE LP FCY CGR+GH IR+C+E+     EN  +I+E EL +G WM+ +PL +
Subjt:  YEILPEFCYRCGRVGHVIRECEEINNGPEEN--NIQE-ELLFGDWMKVTPLFE

KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-0635.23Show/hide
Query:  SYEILPEFCYRCGRVGHVIRECEEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFRWARGGDRGKGRQRKRKTEPPSD
        SYE LP+FCY+CGRVGHV++EC+E+ +  EE        FG W++ +   +  +      V++ F   RG   GKG +  ++ +   D
Subjt:  SYEILPEFCYRCGRVGHVIRECEEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFRWARGGDRGKGRQRKRKTEPPSD

MCI38195.1 hypothetical protein [Trifolium medium]1.5e-0550.98Show/hide
Query:  YEILPEFCYRCGRVGHVIRECEEINNGPEE--NNIQE-ELLFGDWMKVTPL
        YE LP FCY CGR+GH I++CEE+    +E  ++I+E EL +G W+K +PL
Subjt:  YEILPEFCYRCGRVGHVIRECEEINNGPEE--NNIQE-ELLFGDWMKVTPL

PNY15174.1 ribonuclease H, partial [Trifolium pratense]1.2e-0547.06Show/hide
Query:  YEILPEFCYRCGRVGHVIRECEEINNGPE---ENNIQEELLFGDWMKVTPL
        YE LP FCY CGR+GH +++CEE+    E   E+  ++EL +G W+K +PL
Subjt:  YEILPEFCYRCGRVGHVIRECEEINNGPE---ENNIQEELLFGDWMKVTPL

TXG48918.1 hypothetical protein EZV62_024793 [Acer yangbiense]2.0e-0540.86Show/hide
Query:  YEILPEFCYRCGRVGHVIREC--EEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFR---------WARGGDRGKGRQRKRKT
        YE LPE CYRCGR+GHV+R C  + +   PE+ N    LLFG WMKV            P+ +NDFR          + GG  G G+    KT
Subjt:  YEILPEFCYRCGRVGHVIREC--EEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFR---------WARGGDRGKGRQRKRKT

TrEMBL top hitse value%identityAlignment
A0A2K3PIT6 Ribonuclease H (Fragment)5.7e-0647.06Show/hide
Query:  YEILPEFCYRCGRVGHVIRECEEINNGPE---ENNIQEELLFGDWMKVTPL
        YE LP FCY CGR+GH +++CEE+    E   E+  ++EL +G W+K +PL
Subjt:  YEILPEFCYRCGRVGHVIRECEEINNGPE---ENNIQEELLFGDWMKVTPL

A0A2Z6PPZ2 CCHC-type domain-containing protein1.5e-0650.94Show/hide
Query:  YEILPEFCYRCGRVGHVIRECEEINNGPEEN--NIQE-ELLFGDWMKVTPLFE
        YE LP FCY CGR+GH IR+C+E+     EN  +I+E EL +G WM+ +PL +
Subjt:  YEILPEFCYRCGRVGHVIRECEEINNGPEEN--NIQE-ELLFGDWMKVTPLFE

A0A392RRI2 CCHC-type domain-containing protein (Fragment)7.4e-0650.98Show/hide
Query:  YEILPEFCYRCGRVGHVIRECEEINNGPEE--NNIQE-ELLFGDWMKVTPL
        YE LP FCY CGR+GH I++CEE+    +E  ++I+E EL +G W+K +PL
Subjt:  YEILPEFCYRCGRVGHVIRECEEINNGPEE--NNIQE-ELLFGDWMKVTPL

A0A5C7GW15 CCHC-type domain-containing protein9.7e-0640.86Show/hide
Query:  YEILPEFCYRCGRVGHVIREC--EEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFR---------WARGGDRGKGRQRKRKT
        YE LPE CYRCGR+GHV+R C  + +   PE+ N    LLFG WMKV            P+ +NDFR          + GG  G G+    KT
Subjt:  YEILPEFCYRCGRVGHVIREC--EEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFR---------WARGGDRGKGRQRKRKT

A0A5D3C0K2 Reverse transcriptase8.7e-0735.23Show/hide
Query:  SYEILPEFCYRCGRVGHVIRECEEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFRWARGGDRGKGRQRKRKTEPPSD
        SYE LP+FCY+CGRVGHV++EC+E+ +  EE        FG W++ +   +  +      V++ F   RG   GKG +  ++ +   D
Subjt:  SYEILPEFCYRCGRVGHVIRECEEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFRWARGGDRGKGRQRKRKTEPPSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACATCTTACGAAATACTTCCAGAGTTTTGTTATAGATGTGGTAGGGTGGGTCATGTGATAAGAGAATGCGAAGAAATAAACAATGGGCCAGAAGAAAACAATAT
TCAGGAAGAACTTCTATTCGGAGACTGGATGAAAGTGACTCCTCTATTTGAAGGAACCGCGCCATCGGGGTTTCCAAGTGTTAAGAATGACTTCAGATGGGCAAGGGGAG
GAGACCGAGGAAAAGGAAGACAGAGGAAAAGGAAGACAGAACCCCCATCAGACCAGCGGGAGGCCAGAGGTCCGGCCAACAGACTACTGGAAACGGAGAAGACAGAGAGG
GCAAATCCAAACCTAAAAAAAGTCACATCGGTGCCAACGACTAGTTCTCAACCTGAAAAGGAAACTCCTGGGAAAGCGACAGAGAGGACTTGTCTTCAGAAAGGAAAAGG
AATACCAGGGGAAGTGTCAGAGAGGATCAGTGAAAGTGCTCAGAGGATGGATACAGAGAACGAGAAATCCAAAGAGACAACTATCAAGGACAAAGGAAAAGCAGTGTGGG
AAAACAGAAAAGGACAAGAAAAAGGGACTATGGTCAACGAACTACTAAAGCAAAAGAAAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAACATCTTACGAAATACTTCCAGAGTTTTGTTATAGATGTGGTAGGGTGGGTCATGTGATAAGAGAATGCGAAGAAATAAACAATGGGCCAGAAGAAAACAATAT
TCAGGAAGAACTTCTATTCGGAGACTGGATGAAAGTGACTCCTCTATTTGAAGGAACCGCGCCATCGGGGTTTCCAAGTGTTAAGAATGACTTCAGATGGGCAAGGGGAG
GAGACCGAGGAAAAGGAAGACAGAGGAAAAGGAAGACAGAACCCCCATCAGACCAGCGGGAGGCCAGAGGTCCGGCCAACAGACTACTGGAAACGGAGAAGACAGAGAGG
GCAAATCCAAACCTAAAAAAAGTCACATCGGTGCCAACGACTAGTTCTCAACCTGAAAAGGAAACTCCTGGGAAAGCGACAGAGAGGACTTGTCTTCAGAAAGGAAAAGG
AATACCAGGGGAAGTGTCAGAGAGGATCAGTGAAAGTGCTCAGAGGATGGATACAGAGAACGAGAAATCCAAAGAGACAACTATCAAGGACAAAGGAAAAGCAGTGTGGG
AAAACAGAAAAGGACAAGAAAAAGGGACTATGGTCAACGAACTACTAAAGCAAAAGAAAGCTTAG
Protein sequenceShow/hide protein sequence
MGTSYEILPEFCYRCGRVGHVIRECEEINNGPEENNIQEELLFGDWMKVTPLFEGTAPSGFPSVKNDFRWARGGDRGKGRQRKRKTEPPSDQREARGPANRLLETEKTER
ANPNLKKVTSVPTTSSQPEKETPGKATERTCLQKGKGIPGEVSERISESAQRMDTENEKSKETTIKDKGKAVWENRKGQEKGTMVNELLKQKKA