; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032553 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032553
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:34523575..34525381
RNA-Seq ExpressionLag0032553
SyntenyLag0032553
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-1868.67Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVK
        +QRTSVFDRIKP  TR SAFQR+SMA  EEENQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+T+ Q +R+M +L+ K
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVK

KAA0047862.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-1862.5Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE
        ++RTSVFDRIKP  TR S F+R+SMA  EEENQC  S STR  +F+RLS+STSKK RPSTS FDRLK+T+ Q +R+M  L+ KL + E
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-1868.67Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVK
        +QRTSVFDRIKP  TR S FQR+SMA  EEENQC MST TR SAF+RLS+S SKK RPSTS FDRLK+T+ Q +R+M +L+ K
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVK

KAA0062063.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-1863.64Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE
        +QRT VFDRIKP  TR S FQR+SM   EEENQC MSTST+ S F+RLS+STSKK RPSTS FDRLK  + Q +R+M  L+ KL + E
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE

KAA0062746.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-1861.36Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE
        ++RTS+FDRIKP  TR S F+R+SMA  EEENQCL STST+ SAF+RLS+STSKK RPS S FDRLK+T+ Q +R++  L+ K  + E
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein7.3e-1968.67Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVK
        +QRTSVFDRIKP  TR SAFQR+SMA  EEENQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+T+ Q +R+M +L+ K
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVK

A0A5A7TWI6 Retrotransposon gag protein1.6e-1862.5Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE
        ++RTSVFDRIKP  TR S F+R+SMA  EEENQC  S STR  +F+RLS+STSKK RPSTS FDRLK+T+ Q +R+M  L+ KL + E
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE

A0A5A7U974 Retrotransposon gag protein5.6e-1968.67Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVK
        +QRTSVFDRIKP  TR S FQR+SMA  EEENQC MST TR SAF+RLS+S SKK RPSTS FDRLK+T+ Q +R+M +L+ K
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVK

A0A5A7V1P3 Ty3-gypsy retrotransposon protein9.6e-1963.64Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE
        +QRT VFDRIKP  TR S FQR+SM   EEENQC MSTST+ S F+RLS+STSKK RPSTS FDRLK  + Q +R+M  L+ KL + E
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE

A0A5A7V8H3 Retrotransposon gag protein9.6e-1961.36Show/hide
Query:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE
        ++RTS+FDRIKP  TR S F+R+SMA  EEENQCL STST+ SAF+RLS+STSKK RPS S FDRLK+T+ Q +R++  L+ K  + E
Subjt:  EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAGCTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTT
GATGTCCACCTCTACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTC
AATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTGATGAACGAATGGAAGTTGTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCA
CAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCGCACATCGCT
TCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTG
CAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTCATGCGTTTGGTGCAGTTCCTTCTCTCCACGTTCAA
AGGTTCTCACGCATTCGCTACAGTTCATTTCCTCCAAGTTCAAGGTTCTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAG
TTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTATGCGCTTCGTTGCT
ACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCCTCACGCGCTTCGATCGCTCCTTCTCCAAGTTCGAAGGCTCTT
CGCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCTCTTCT
CTCTACTGCTCATTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTT
TCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAGCTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTT
GATGTCCACCTCTACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTC
AATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTGATGAACGAATGGAAGTTGTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCA
CAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCGCACATCGCT
TCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTG
CAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTCATGCGTTTGGTGCAGTTCCTTCTCTCCACGTTCAA
AGGTTCTCACGCATTCGCTACAGTTCATTTCCTCCAAGTTCAAGGTTCTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAG
TTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTATGCGCTTCGTTGCT
ACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCCTCACGCGCTTCGATCGCTCCTTCTCCAAGTTCGAAGGCTCTT
CGCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCTCTTCT
CTCTACTGCTCATTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTT
TCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA
Protein sequenceShow/hide protein sequence
MGEQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNEWKLFPPSSKVLTRFAAVPSS
QFEGSHALRCSSFPQVRRFSRRFAAVPSSKLKVRTSLRFALRFVAVPSSKFEGSHTLRCSFFSLTSKVLTRFAAIPSSLSLKVLTLLRCSSFLQVRRFHAFGAVPSLHVQ
RFSRIRYSSFPPSSRFSCASLQFLLPKFEGSHALRCSSFLPKFEVPSSKFEGSHALRCAVPSSKFEGSYALRCYLPPSSKVLSRAAAVPSSKYEGSSRASIAPSPSSKAL
RSTAPSPSSKALLSVATSPSSKALLSTAPSPSSKALLSTAHSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLVVDGVRCASSSNVGS