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Lag0032627 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032627
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionnuclear pore complex protein NUP58-like
Genome locationchr11:35421082..35423563
RNA-Seq ExpressionLag0032627
SyntenyLag0032627
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0015031 - protein transport (biological process)
GO:0051028 - mRNA transport (biological process)
GO:0005643 - nuclear pore (cellular component)
GO:0008139 - nuclear localization sequence binding (molecular function)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsIPR024882 - Nucleoporin p58/p45


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OVA15453.1 hypothetical protein BVC80_1229g36 [Macleaya cordata]1.7e-1075Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDRS
        EYRDESQRLDQCSRLYDSSVSNDGFELDA+ IVQE GG+    +R+++
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDRS
TYK12916.1 nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa]9.9e-1176.6Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
XP_008440230.1 PREDICTED: nuclear pore complex protein NUP58 isoform X1 [Cucumis melo]9.9e-1176.6Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
XP_008440231.1 PREDICTED: nuclear pore complex protein NUP58 isoform X2 [Cucumis melo]9.9e-1176.6Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
XP_038882193.1 nuclear pore complex protein NUP58 [Benincasa hispida]9.9e-1176.6Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
TrEMBL top hitse value%identityAlignment
A0A1S3B190 nuclear pore complex protein NUP58 isoform X14.8e-1176.6Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
A0A1S3B1D2 nuclear pore complex protein NUP58 isoform X24.8e-1176.6Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
A0A200QY88 Uncharacterized protein8.2e-1175Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDRS
        EYRDESQRLDQCSRLYDSSVSNDGFELDA+ IVQE GG+    +R+++
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDRS
A0A5D3CR89 Nuclear pore complex protein NUP58 isoform X14.8e-1176.6Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
A0A6J1KTN6 nuclear pore complex protein NUP58-like8.2e-1176.6Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
SwissProt top hitse value%identityAlignment
Q8RWH9 Nuclear pore complex protein NUP583.0e-1070.21Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        E+R ESQRLDQCSRLYDSSVS++GFE DA++IVQE GG+   T  DR
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
Arabidopsis top hitse value%identityAlignment
AT4G37130.1 hydroxyproline-rich glycoprotein family protein2.1e-1170.21Show/hide
Query:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR
        E+R ESQRLDQCSRLYDSSVS++GFE DA++IVQE GG+   T  DR
Subjt:  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGAGCGATTTTCAAGCGGGAGGAGGAGAAGATTTTTCCGGCCGATTTTCGGGGGAGGCTCGTCGTCGATAGGGGGTAGGGAGTATCGAGATGAAAGTCAGAGGTT
GGATCAGTGTAGTCGCCTCTACGATTCTTCAGTCTCTAACGATGGGTTTGAGCTTGATGCCAATCAAATTGTTCAGGAATTCGGAGGCGTTTTGGGACAAACCAAGCGGG
ACCGGAGCGGCCAGAGGCAGCAGGGACCAAACGGAGGCGACCGAGCTCGGCCCGTGCAAGCGAGCCGACCATATTGGCCTGACCCTTTGGTCTGGTCTTCTTCTGGGTCG
ATTTCCTGGTCTATCCCTGCCTGGTTGTCCTCGGCAGCTTCTTGTGCTTCGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGAGCGATTTTCAAGCGGGAGGAGGAGAAGATTTTTCCGGCCGATTTTCGGGGGAGGCTCGTCGTCGATAGGGGGTAGGGAGTATCGAGATGAAAGTCAGAGGTT
GGATCAGTGTAGTCGCCTCTACGATTCTTCAGTCTCTAACGATGGGTTTGAGCTTGATGCCAATCAAATTGTTCAGGAATTCGGAGGCGTTTTGGGACAAACCAAGCGGG
ACCGGAGCGGCCAGAGGCAGCAGGGACCAAACGGAGGCGACCGAGCTCGGCCCGTGCAAGCGAGCCGACCATATTGGCCTGACCCTTTGGTCTGGTCTTCTTCTGGGTCG
ATTTCCTGGTCTATCCCTGCCTGGTTGTCCTCGGCAGCTTCTTGTGCTTCGAAGTAG
Protein sequenceShow/hide protein sequence
MSERFSSGRRRRFFRPIFGGGSSSIGGREYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDRSGQRQQGPNGGDRARPVQASRPYWPDPLVWSSSGS
ISWSIPAWLSSAASCASK