; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032656 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032656
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:35727700..35728752
RNA-Seq ExpressionLag0032656
SyntenyLag0032656
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5477145.1 hypothetical protein F2P56_003817 [Juglans regia]4.0e-6843.41Show/hide
Query:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFF------------------------IKNSGTSLISYLRTNLAFVPSCSIFDNVIMGHECLHSMK
        MN  LL+PF   E++ A+ QM+P  +PGPDGFPA+F+                        +K+   + I    T  AFVP   I DNVI+  E LHSM 
Subjt:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFF------------------------IKNSGTSLISYLRTNLAFVPSCSIFDNVIMGHECLHSMK

Query:  NKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISR
            G+ G++A+KL+M+KAYDRVEW FLE+V++K+GFN  W+ LIM C+ S  +S+L+NG P    +P RG+RQGDPLSPYLF+LVSEVLSSL+  A + 
Subjt:  NKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISR

Query:  QNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKK
        +++ GF   K   +++HLFFADDSL+FC+A++ E  A  ++L  Y+ ASG ++N  K+++FFS N   E  + I+ + G         YLG+P    R +
Subjt:  QNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKK

Query:  RDDFKEIKQRV
          DFK I  R+
Subjt:  RDDFKEIKQRV

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]4.7e-6948.34Show/hide
Query:  NEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFF---------------IKNSGTSLISYLRTNLAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWL
        N  L   FTR EIE A+K MHPSK PGPDG  A+FF               +K+   S+IS   T  AFVP  SI DN I+G EC++++KNK+ G++G +
Subjt:  NEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFF---------------IKNSGTSLISYLRTNLAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWL

Query:  AMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGK
        AMKL+MSKAYDRVEW +L  +++K+GF + WV LIM CV+S +F+VL+NGVP     P RGLRQGDPLSPYLF++ +E LS+LI     + N++  K  +
Subjt:  AMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGK

Query:  FCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQA-SGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQ
         CP +SHLF+ADD L+F KAS     + K IL  Y++A SGQ +N+DKS    S N   +   VI   L +   E LG+YLG+P    R KR  F  IK 
Subjt:  FCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQA-SGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQ

Query:  RV
        RV
Subjt:  RV

XP_042950144.1 uncharacterized protein LOC122282259 [Carya illinoinensis]1.4e-6847.06Show/hide
Query:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIKNSGTSLISYL--RTNLAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDR
        MNE+L  PFT +E+  A+ QMHP+KAPGPD       I N   +L+  L   +  AFVP   I DNV++ +E +H +++K+ G+ G++++KL+MSKAYDR
Subjt:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIKNSGTSLISYL--RTNLAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDR

Query:  VEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFAD
        VEW FLER+++++GF + W+ LIM CV S  FSV+LNGVPTG I P RGLRQGDPLSPYLFLL +E L S++  A     + G +  +  P ++HL FAD
Subjt:  VEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFAD

Query:  DSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV
        DS+IFCKA ++     ++IL +Y+ ASGQ++N+DK+++ FS NV       I ++ G   +++  KYLG+P    RKK + F +IK RV
Subjt:  DSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV

XP_042962672.1 uncharacterized protein LOC122296942 [Carya illinoinensis]5.7e-6741.08Show/hide
Query:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIKNSG-------TSLISYLRTNL----------------------------------------
        MNE LL P+   E+E A+KQMHPSKAPGPDG P LFF K  G       T+L+S L + +                                        
Subjt:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIKNSG-------TSLISYLRTNL----------------------------------------

Query:  -------------------AFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLL
                           AFVP   I DNV++ +E LH ++NK+ GR G++++KL+MSKAYDRV+W FLE+++  LGF+   + LIM+CV++  FSVL+
Subjt:  -------------------AFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLL

Query:  NGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKS
        NG P G I+P RGLRQGDPLSPYLFLL +E L SL+    SR+ + G +  +  P ++HL FADDS+IFCKA +      + +LNKY++ASGQ +N +K+
Subjt:  NGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKS

Query:  AVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV
        ++ FS NV+ +    I+ L G    ++  KYLG P    R K+  F +IK+RV
Subjt:  AVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV

XP_042965942.1 uncharacterized protein LOC122299620 [Carya illinoinensis]7.5e-6740.79Show/hide
Query:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK-----------------NSG--------------------TSLISYLRTNL----------
        MNE+L  PFT +E+  A+ QMHP+KAPGPDG P LF+ K                 N+G                    T ++ +   +L          
Subjt:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK-----------------NSG--------------------TSLISYLRTNL----------

Query:  -------------------AFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLL
                           AFVP   I DNV++ +E +H +++++ G+ G++++KL+MSKAYDRVEW FLER+++++GF + W+ LIM CV S  FSV+L
Subjt:  -------------------AFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLL

Query:  NGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKS
        NGVPTG I P RGLRQGDPLSPYLFLL +E L S++  A     + G +  +  PT++HL FADDS+IFCKA ++     ++IL +Y+ ASGQK+N+DK+
Subjt:  NGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKS

Query:  AVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV
        ++ FS NV S     I ++ G   +++  KYLG+P   SRKK + F +IK RV
Subjt:  AVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV

TrEMBL top hitse value%identityAlignment
A0A2N9GD63 Reverse transcriptase domain-containing protein1.6e-7050Show/hide
Query:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK---NSGTSLISYLRTNL------AFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLN
        +N +LL PFT  E+  A+ QMHPSKAPG DG  + FF K     GTS+ S + + L      AFVP   I DNV +  E LH MK K+ G+ G +A+KL+
Subjt:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK---NSGTSLISYLRTNL------AFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLN

Query:  MSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTV
        MSKAYDRVEW F+E ++ KLGF   W+ +IMEC+++ ++SVLL+GVP G I+P RGLRQGDPLSPYLFLL  E LS+L+  A +   L G K+ +  P V
Subjt:  MSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTV

Query:  SHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV
        SHLFFADDSL+F KAS+ E   F +IL  Y+ +SGQ++N +K+A+FFS N   E    I DL G    +   KYLG+P    R KR  F  +K+R+
Subjt:  SHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV

A0A2N9HPN3 Reverse transcriptase domain-containing protein6.0e-7047.46Show/hide
Query:  NEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK-------NSGTSLISYLRTN--LAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNM
        N++LL P+T  E+  A+ QMHPSKAPG DG  + FF K       +  T+++S L ++   AFVP   I DNV +  E LH MK K+ G+ G +A+KL+M
Subjt:  NEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK-------NSGTSLISYLRTN--LAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNM

Query:  SKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVS
        SKAYDRVEW F+E ++ KLGF   W+ +IMEC+++ ++S+LL+GVP G I+P RGLRQGDPLSPYLFL+ +E LS+L+  +     L G ++ +  P VS
Subjt:  SKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVS

Query:  HLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV
        HLFFADDSL+F KAS+ E   F +IL  Y+ +SGQ++N +K+A+FFS N        I D  G   V+   KYLG+P    R KR  F  +K+R+
Subjt:  HLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV

A0A2N9J4E8 Reverse transcriptase domain-containing protein4.2e-7149.32Show/hide
Query:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK-------NSGTSLISYLRTN--LAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLN
        +N +LL PFT  E+  A+ QMHPSKAPG DG  + FF K       +  ++++S L ++   AFVP   I DNV +  E LH MK K+ GR G +A+KL+
Subjt:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK-------NSGTSLISYLRTN--LAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLN

Query:  MSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTV
        MSKAYDRVEW F+E ++ KLGF   W+ +IMEC+++ ++SVLL+GVP G I+P RGLRQGDPLSPYLFLL +E LS+L+  A +   L G K+ +  P V
Subjt:  MSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTV

Query:  SHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV
        SHLFFADDSL+F KAS+ E   F +IL  Y+ +SGQ++N +K+A+FFS N   E    I DL G    +   KYLG+P    R KR  F  +K+R+
Subjt:  SHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV

A0A6J1DUG8 uncharacterized protein LOC1110241352.3e-6948.34Show/hide
Query:  NEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFF---------------IKNSGTSLISYLRTNLAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWL
        N  L   FTR EIE A+K MHPSK PGPDG  A+FF               +K+   S+IS   T  AFVP  SI DN I+G EC++++KNK+ G++G +
Subjt:  NEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFF---------------IKNSGTSLISYLRTNLAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWL

Query:  AMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGK
        AMKL+MSKAYDRVEW +L  +++K+GF + WV LIM CV+S +F+VL+NGVP     P RGLRQGDPLSPYLF++ +E LS+LI     + N++  K  +
Subjt:  AMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGK

Query:  FCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQA-SGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQ
         CP +SHLF+ADD L+F KAS     + K IL  Y++A SGQ +N+DKS    S N   +   VI   L +   E LG+YLG+P    R KR  F  IK 
Subjt:  FCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQA-SGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQ

Query:  RV
        RV
Subjt:  RV

A0A7N2L6Z9 Reverse transcriptase domain-containing protein6.6e-6942.49Show/hide
Query:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK-----------------NSGTSLISYLRTNLAFVPSCS-----------------------
        MN +L   FTR EI  A+KQ+HP+K+PGPDG  A+FF K                 N G SL    +TN+  +P  S                       
Subjt:  MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIK-----------------NSGTSLISYLRTNLAFVPSCS-----------------------

Query:  --------------------------IFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLL
                                  I DNV++ +E +H +K+KK G+  ++A KL+MSKA+DRVEW F+ERV+ K+GFN  W+ LIM C+ S  +SV++
Subjt:  --------------------------IFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLL

Query:  NGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKS
        NG   G I+P RGLRQGDPLSPYLFLL +E LS+L+  A   Q L+G    + CP ++HLFFADDSL+FCKA+ +E    K+IL KY+ ASGQKVN DKS
Subjt:  NGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKS

Query:  AVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV
        ++FFS N   E    I ++LG     +  KYLG+P    R K+  F EIK+RV
Subjt:  AVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein4.8e-1629.23Show/hide
Query:  MKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKF
        + ++  KA+D+++  F+ + L KLG +  ++++I         +++LNG        + G RQG PLSP LF +V EVL+  I      + + G + GK 
Subjt:  MKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKF

Query:  CPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKE
           V    FADD +++ +  I       ++++ + + SG K+N+ KS  F   N + +  S I+  L   +  K  KYLG+    +R  +D FKE
Subjt:  CPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKE

P08548 LINE-1 reverse transcriptase homolog3.7e-1627.49Show/hide
Query:  LHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLIT
        ++ +KNK       + + ++  KA+D ++  F+ R L K+G   ++++LI         +++LNGV       + G RQG PLSP LF +V EVL+  I 
Subjt:  LHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLIT

Query:  GAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFA
             + + G   G     +    FADD +++ + +        +++ +Y   SG K+N  KS  F   N +++    + D +   +V K  KYLGV   
Subjt:  GAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFA

Query:  FSRKKRDDFKE
         ++  +D +KE
Subjt:  FSRKKRDDFKE

P11369 LINE-1 retrotransposable element ORF2 protein7.7e-1426.05Show/hide
Query:  LAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGD
        + F+P    + N+      +H +   K      + + L+  KA+D+++  F+ +VL + G    ++ +I         ++ +NG     I  + G RQG 
Subjt:  LAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGD

Query:  PLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVF-FSLNVHSEFCSVIV
        PLSPYLF +V EVL+  I     ++ + G + GK    +S L  ADD +++             ++N + +  G K+N +KS  F ++ N  +E    I 
Subjt:  PLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNKYDQASGQKVNIDKSAVF-FSLNVHSEFCSVIV

Query:  DLLGMPMVEKLGKYLGVPFAFSRKKRDD--FKEIKQRV
        +     +V    KYLGV      K   D  FK +K+ +
Subjt:  DLLGMPMVEKLGKYLGVPFAFSRKKRDD--FKEIKQRV

P92555 Uncharacterized mitochondrial protein AtMg012503.8e-1351.47Show/hide
Query:  LLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDS
        ++NG P G + P RGLRQGDPLSPYLF+L +EVLS L   A  +  L G +     P ++HL FADD+
Subjt:  LLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDS

Q05118 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)2.0e-0628.46Show/hide
Query:  HSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITG
        H +K ++     +  + L++ KA+D V    + R +   G +      IM  +     ++++ G  T +I  + G++QGDPLSP LF +   VL  L+T 
Subjt:  HSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITG

Query:  AISRQNLSGFKSGKFCPTVSHLFFADDSLI
            Q   G      C  ++ L FADD L+
Subjt:  AISRQNLSGFKSGKFCPTVSHLFFADDSLI

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases1.8e-1040.79Show/hide
Query:  LRTNL------AFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWV
        L TNL      +F+P     DN++   E +HSM+ KK G  GW+ +KL++ KAYDR+ W +LE  L+  GF   W+
Subjt:  LRTNL------AFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLKLGFNSSWV

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)2.7e-1451.47Show/hide
Query:  LLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDS
        ++NG P G + P RGLRQGDPLSPYLF+L +EVLS L   A  +  L G +     P ++HL FADD+
Subjt:  LLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAAACTGCTTGCTCCATTTACTAGAAGTGAGATCGAGAGAGCCATAAAGCAAATGCATCCATCGAAGGCGCCTGGTCCAGATGGCTTCCCTGCACTTTTTTT
TATCAAAAATTCTGGAACGAGTTTGATATCATATCTGAGAACCAATCTTGCGTTTGTGCCTAGTTGTTCAATCTTTGATAATGTGATTATGGGACATGAATGCTTGCATT
CCATGAAAAATAAGAAGACTGGACGAGTGGGTTGGTTAGCAATGAAGCTGAACATGAGCAAGGCTTATGATCGTGTTGAATGGTGTTTCCTGGAAAGAGTTTTATTAAAG
TTGGGGTTCAATTCAAGTTGGGTTCAATTGATTATGGAATGTGTCAAGTCCACTAAATTTTCAGTGTTGTTAAATGGGGTTCCTACAGGCAGAATACTACCTCAGCGAGG
TCTCAGACAGGGCGATCCTTTATCACCCTACTTATTTTTGCTTGTCTCTGAAGTGTTATCATCTCTCATTACAGGGGCCATATCTCGACAGAATTTATCTGGTTTTAAGT
CAGGGAAATTTTGCCCTACAGTATCTCATCTTTTCTTTGCAGACGATAGTCTTATTTTCTGTAAGGCATCGATTAAGGAGGTTTGGGCATTTAAACAAATTCTGAACAAA
TATGATCAGGCGTCTGGTCAGAAGGTCAATATTGATAAATCAGCTGTGTTTTTCTCTCTGAATGTGCATTCCGAGTTTTGTTCTGTCATAGTTGATTTATTAGGAATGCC
CATGGTTGAAAAACTTGGGAAATATTTGGGTGTTCCTTTTGCTTTTAGCAGAAAAAAGAGGGATGATTTTAAGGAAATAAAGCAAAGAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAAACTGCTTGCTCCATTTACTAGAAGTGAGATCGAGAGAGCCATAAAGCAAATGCATCCATCGAAGGCGCCTGGTCCAGATGGCTTCCCTGCACTTTTTTT
TATCAAAAATTCTGGAACGAGTTTGATATCATATCTGAGAACCAATCTTGCGTTTGTGCCTAGTTGTTCAATCTTTGATAATGTGATTATGGGACATGAATGCTTGCATT
CCATGAAAAATAAGAAGACTGGACGAGTGGGTTGGTTAGCAATGAAGCTGAACATGAGCAAGGCTTATGATCGTGTTGAATGGTGTTTCCTGGAAAGAGTTTTATTAAAG
TTGGGGTTCAATTCAAGTTGGGTTCAATTGATTATGGAATGTGTCAAGTCCACTAAATTTTCAGTGTTGTTAAATGGGGTTCCTACAGGCAGAATACTACCTCAGCGAGG
TCTCAGACAGGGCGATCCTTTATCACCCTACTTATTTTTGCTTGTCTCTGAAGTGTTATCATCTCTCATTACAGGGGCCATATCTCGACAGAATTTATCTGGTTTTAAGT
CAGGGAAATTTTGCCCTACAGTATCTCATCTTTTCTTTGCAGACGATAGTCTTATTTTCTGTAAGGCATCGATTAAGGAGGTTTGGGCATTTAAACAAATTCTGAACAAA
TATGATCAGGCGTCTGGTCAGAAGGTCAATATTGATAAATCAGCTGTGTTTTTCTCTCTGAATGTGCATTCCGAGTTTTGTTCTGTCATAGTTGATTTATTAGGAATGCC
CATGGTTGAAAAACTTGGGAAATATTTGGGTGTTCCTTTTGCTTTTAGCAGAAAAAAGAGGGATGATTTTAAGGAAATAAAGCAAAGAGTATGA
Protein sequenceShow/hide protein sequence
MNEKLLAPFTRSEIERAIKQMHPSKAPGPDGFPALFFIKNSGTSLISYLRTNLAFVPSCSIFDNVIMGHECLHSMKNKKTGRVGWLAMKLNMSKAYDRVEWCFLERVLLK
LGFNSSWVQLIMECVKSTKFSVLLNGVPTGRILPQRGLRQGDPLSPYLFLLVSEVLSSLITGAISRQNLSGFKSGKFCPTVSHLFFADDSLIFCKASIKEVWAFKQILNK
YDQASGQKVNIDKSAVFFSLNVHSEFCSVIVDLLGMPMVEKLGKYLGVPFAFSRKKRDDFKEIKQRV