; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032700 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032700
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr11:36461702..36463132
RNA-Seq ExpressionLag0032700
SyntenyLag0032700
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR017956 - AT hook, DNA-binding motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8003047.1 hypothetical protein GBF38_015751 [Nibea albiflora]5.5e-0625.76Show/hide
Query:  PGSSRASLQAVTIIPGV-RTLLWGKG--LGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFSRLSSRCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHG
        PG  R  +     +PG  R  +W      GR R +  +S S  G  R    +     GR   +  +     G  R    +     GR R +  +S S  G
Subjt:  PGSSRASLQAVTIIPGV-RTLLWGKG--LGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFSRLSSRCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHG

Query:  HPRGAYTLLGKSLGRPRKFPSLSSSCHCHPRGAYTLLGKSLGRPRKFPSLSSSCQGHPRGAYTLLGKSLGRPRKFPSLSSSYHGHPRGAYTLLGKSLGRP
          R    +     GR R +  +S S     R    +     GR R +  +S S QG  R    +     GR R +  +S S  G  R    +L    GR 
Subjt:  HPRGAYTLLGKSLGRPRKFPSLSSSCHCHPRGAYTLLGKSLGRPRKFPSLSSSCQGHPRGAYTLLGKSLGRPRKFPSLSSSYHGHPRGAYTLLGKSLGRP

Query:  RKFLSLSSSCQGHPRGAYTLLGKSLGRPR
        R ++ +S S QG  R    +L    GR R
Subjt:  RKFLSLSSSCQGHPRGAYTLLGKSLGRPR

TrEMBL top hitse value%identityAlignment
A0A3Q3AQ40 Uncharacterized protein9.5e-0435.97Show/hide
Query:  RKFPSLSSSCHGHPRGAYTLLGKSLGRPRK-------FSRLSSRCHGHPRGAYTLLGKSLGRP--------RKFPSLSSSCHGHPRGAYTLLGKSLGRPR
        RK P LS  C G  R    L  K  G  RK          L  +C G  R   +LLGK    P         K P LS  C G  R   +L  K  G  R
Subjt:  RKFPSLSSSCHGHPRGAYTLLGKSLGRPRK-------FSRLSSRCHGHPRGAYTLLGKSLGRP--------RKFPSLSSSCHGHPRGAYTLLGKSLGRPR

Query:  KFPSLSSSCHCHPRGAYTLLGKSLGRPRKFPSLSSSCQG
        K P LS  C    R   +LLGK  G  RK P L   C G
Subjt:  KFPSLSSSCHCHPRGAYTLLGKSLGRPRKFPSLSSSCQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATTACAACAAAGGAATGGAATAGCCTTAACCTATCCCTTATTCCTAGCCTCCACTCAACATGGACATTTATTACCTCAAGCGTTGCATTTTTCGAGCGAGAAGG
ACTAGTTCCATACCTGGCCTTTTCAAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTATTTTCTCGCCGACGTCCAGGCTTATGTGCA
GATTTGCCCGACCCTACCTTAAGCATCTCCCTGCGGCTTTGAGCGCCTCGACTGTGCTAAAAAGTAAAGTGACTGAGAACTCGAAACAATCACGCTGCTTTGAATGTGTG
CCTGATGGTTTGCCTTGGAGTTGGGATGCTTGGCCTTGGCATGACGGTGCGTACACTCTTCCGGGGAAAAGCTTGAGGAGGCCTAAGAAGTTCCCAGGCCTCTGTTCAAG
CTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCG
TACACTCCTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGATCATCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGGCTTG
GGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGCGCCT
CTCTTCAAGGTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCA
GGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATTGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAA
AGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCC
GAGCCTCTCTTCAAGCTATCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGACCTAGGAAATTCCTGAGCCTCTCTTCAAGCTGTCAGGGTC
ATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCTCGAGCCTCTCTTCAAGCTGTTGTATTCATCCCGAGGGTGCGTACACTCAATCG
GGGGAAGTGCGGAAGTCTGGCCTCTACAAGGATCATTCCCGTCTGGCCACACGCGTTACATCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAGAACTTCATTA
A
mRNA sequenceShow/hide mRNA sequence
ATGACGATTACAACAAAGGAATGGAATAGCCTTAACCTATCCCTTATTCCTAGCCTCCACTCAACATGGACATTTATTACCTCAAGCGTTGCATTTTTCGAGCGAGAAGG
ACTAGTTCCATACCTGGCCTTTTCAAAGGTGGATGGTCGGCCTCGGCCTTGGCATGAGGCTGACCAGCAGCTCTGTACTATTTTCTCGCCGACGTCCAGGCTTATGTGCA
GATTTGCCCGACCCTACCTTAAGCATCTCCCTGCGGCTTTGAGCGCCTCGACTGTGCTAAAAAGTAAAGTGACTGAGAACTCGAAACAATCACGCTGCTTTGAATGTGTG
CCTGATGGTTTGCCTTGGAGTTGGGATGCTTGGCCTTGGCATGACGGTGCGTACACTCTTCCGGGGAAAAGCTTGAGGAGGCCTAAGAAGTTCCCAGGCCTCTGTTCAAG
CTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCG
TACACTCCTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCACGATCATCCCAGGGGTGCGTACACTCCTCTGGGGAAAAGGCTTG
GGGAGGCCCAGGAAGTTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGCGCCT
CTCTTCAAGGTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCA
GGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATTGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAA
AGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCC
GAGCCTCTCTTCAAGCTATCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGACCTAGGAAATTCCTGAGCCTCTCTTCAAGCTGTCAGGGTC
ATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCGAGGAAATTCTCGAGCCTCTCTTCAAGCTGTTGTATTCATCCCGAGGGTGCGTACACTCAATCG
GGGGAAGTGCGGAAGTCTGGCCTCTACAAGGATCATTCCCGTCTGGCCACACGCGTTACATCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAGAACTTCATTA
A
Protein sequenceShow/hide protein sequence
MTITTKEWNSLNLSLIPSLHSTWTFITSSVAFFEREGLVPYLAFSKVDGRPRPWHEADQQLCTIFSPTSRLMCRFARPYLKHLPAALSASTVLKSKVTENSKQSRCFECV
PDGLPWSWDAWPWHDGAYTLPGKSLRRPKKFPGLCSSCHGHPRGAYTLLGKRLGEAQEVPEPLFKLSRSSQGCVHSSGEKAWGGPGSSRASLQAVTIIPGVRTLLWGKGL
GRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFSRLSSRCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHCHPRGAYTLLGK
SLGRPRKFPSLSSSCQGHPRGAYTLLGKSLGRPRKFPSLSSSYHGHPRGAYTLLGKSLGRPRKFLSLSSSCQGHPRGAYTLLGKSLGRPRKFSSLSSSCCIHPEGAYTQS
GEVRKSGLYKDHSRLATRVTSYGKSTLCETQCKELH