; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032800 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032800
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr11:37691046..37692155
RNA-Seq ExpressionLag0032800
SyntenyLag0032800
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050146.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.2e-2549.66Show/hide
Query:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV
        +NNH      +   +VH     +      + P+F+P ++ G        GR  CQIC K GH ALDCYNRMNFSYQ RH P           +QLA M+V
Subjt:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV

Query:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV
        NS+N + S + +NNF L DSGCNVHMTN+LANLNLS NYNGEE+VTV
Subjt:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-2450.99Show/hide
Query:  QTPHNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAV
        Q  +NNH      +    VH     +      H P+F+      SG N    GR  CQIC K  H ALDCYN MNFSYQ+RHSP           +QLA 
Subjt:  QTPHNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAV

Query:  MSVNSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVG
        M+VNS+N + SS+ +NNF LSDSG NVHMTN+LANLNLS NYNGEE+VTVG
Subjt:  MSVNSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVG

TYK06402.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.2e-2549.66Show/hide
Query:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV
        +NNH      +   +VH     +      + P+F+P ++ G        GR  CQIC K GH ALDCYNRMNFSYQ RH P           +QLA M+V
Subjt:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV

Query:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV
        NS+N + S + +NNF L DSGCNVHMTN+LANLNLS NYNGEE+VTV
Subjt:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]1.2e-2650.68Show/hide
Query:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV
        +NNH      +   +VH     +      H P+F+P     SG N    GR  CQIC K GH+ALDCYNRMNFSYQ +H P           +QL  M++
Subjt:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV

Query:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVG
        NS+N +   + +NNFLLSDSGCNVHMTN+LANLNLS NYNGEE+VTVG
Subjt:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVG

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]7.1e-1440.52Show/hide
Query:  NRGRAVHSFNHDVENIRQQHN----PNFQP-YSHVGSGQNTLN-------EGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVM
        NR  A H  N   +  R ++N     NF P +++ G G+++ N       + R  CQIC K GH ALDCYNRMNF +Q RH P +LA M       +AV 
Subjt:  NRGRAVHSFNHDVENIRQQHN----PNFQP-YSHVGSGQNTLN-------EGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVM

Query:  SVNSINPEHSSDTSNNFLLSDSGCNVHMTNDLANL---NLSTNYNGEESVTVG
        + + +   +SS T+    L+DS CN HMT DL+NL   +++++YNGEE+++VG
Subjt:  SVNSINPEHSSDTSNNFLLSDSGCNVHMTNDLANL---NLSTNYNGEESVTVG

TrEMBL top hitse value%identityAlignment
A0A1S4E394 uncharacterized protein LOC1079918256.0e-2750.68Show/hide
Query:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV
        +NNH      +   +VH     +      H P+F+P     SG N    GR  CQIC K GH+ALDCYNRMNFSYQ +H P           +QL  M++
Subjt:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV

Query:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVG
        NS+N +   + +NNFLLSDSGCNVHMTN+LANLNLS NYNGEE+VTVG
Subjt:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVG

A0A2N9IKH6 CCHC-type domain-containing protein1.2e-1431.68Show/hide
Query:  HNNHSNRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFS-------------CQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSI
        +NNH  RGR  +S NH   N   Q N  F    +  S   T    +FS             CQIC K GH ALDCY+RM+F+YQ RH P +LA M+  S 
Subjt:  HNNHSNRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFS-------------CQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSI

Query:  NQLAVMSVNSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV--------------------------------------GYICYNP
                       S   +    L+D+G   H+T++L NL   T Y G + V V                                      GYIC +P
Subjt:  NQLAVMSVNSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV--------------------------------------GYICYNP

Query:  HTKKSIVSRHVIFHETIFTFATSTTKSTSSSP-PTTIDPTPLLTLLNISPSTPPIPNSTHLP
        HT +  +SRHV+F+ + F    S    +S SP  ++ D T  L +L  S + P IP+ST  P
Subjt:  HTKKSIVSRHVIFHETIFTFATSTTKSTSSSP-PTTIDPTPLLTLLNISPSTPPIPNSTHLP

A0A5A7U7J4 Putative mitochondrial protein2.5e-2549.66Show/hide
Query:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV
        +NNH      +   +VH     +      + P+F+P ++ G        GR  CQIC K GH ALDCYNRMNFSYQ RH P           +QLA M+V
Subjt:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV

Query:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV
        NS+N + S + +NNF L DSGCNVHMTN+LANLNLS NYNGEE+VTV
Subjt:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV

A0A5A7VGG0 Retrotransposon protein1.3e-2450.99Show/hide
Query:  QTPHNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAV
        Q  +NNH      +    VH     +      H P+F+      SG N    GR  CQIC K  H ALDCYN MNFSYQ+RHSP           +QLA 
Subjt:  QTPHNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAV

Query:  MSVNSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVG
        M+VNS+N + SS+ +NNF LSDSG NVHMTN+LANLNLS NYNGEE+VTVG
Subjt:  MSVNSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVG

A0A5D3C579 Putative mitochondrial protein2.5e-2549.66Show/hide
Query:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV
        +NNH      +   +VH     +      + P+F+P ++ G        GR  CQIC K GH ALDCYNRMNFSYQ RH P           +QLA M+V
Subjt:  HNNHS-----NRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSV

Query:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV
        NS+N + S + +NNF L DSGCNVHMTN+LANLNLS NYNGEE+VTV
Subjt:  NSINPEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCGCTCAACCCACCTTCACAGACGCCACACAACAACCACAGTAATCGCGGGCGGGCGGTGCATTCCTTCAATCATGACGTTGAGAATATTCGACAGCAACACAA
CCCTAATTTTCAGCCTTATTCTCACGTCGGATCTGGACAAAATACACTGAATGAAGGCCGATTTTCTTGCCAAATTTGCTCTAAATTTGGACATATTGCACTTGATTGTT
ACAACCGGATGAATTTTTCTTATCAAAACCGACATTCCCCAGCAAAATTGGCAGTTATGTCGGTAAATTCAATAAACCAATTGGCAGTTATGTCGGTAAATTCAATAAAC
CCAGAGCATTCCTCTGATACTTCTAATAATTTTTTGTTATCTGACAGTGGATGCAATGTTCACATGACAAACGACTTGGCCAATCTCAATTTATCAACCAATTACAATGG
AGAAGAATCTGTCACAGTGGGTTACATATGCTATAACCCTCACACAAAGAAATCAATTGTATCTCGTCATGTCATTTTTCATGAGACTATTTTTACTTTTGCCACATCTA
CCACCAAATCCACCTCCTCTTCCCCTCCCACTACCATTGACCCAACTCCATTACTCACTCTCCTAAATATCTCTCCATCCACTCCTCCGATCCCAAACTCGACTCACTTA
CCTACTGTTGACAATTCTGGTCCATCCATAGTTGAGTTCGATGATAATATTACTTGCGCTACTCGTTCTTGTCAGATTACAAATAATACAAATTTGATGCCTGAGCCTGC
AGATAACACTCAAACTACTGTATGTTTGATGCCTACTAATACTCACTCCATGCAAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCGCTCAACCCACCTTCACAGACGCCACACAACAACCACAGTAATCGCGGGCGGGCGGTGCATTCCTTCAATCATGACGTTGAGAATATTCGACAGCAACACAA
CCCTAATTTTCAGCCTTATTCTCACGTCGGATCTGGACAAAATACACTGAATGAAGGCCGATTTTCTTGCCAAATTTGCTCTAAATTTGGACATATTGCACTTGATTGTT
ACAACCGGATGAATTTTTCTTATCAAAACCGACATTCCCCAGCAAAATTGGCAGTTATGTCGGTAAATTCAATAAACCAATTGGCAGTTATGTCGGTAAATTCAATAAAC
CCAGAGCATTCCTCTGATACTTCTAATAATTTTTTGTTATCTGACAGTGGATGCAATGTTCACATGACAAACGACTTGGCCAATCTCAATTTATCAACCAATTACAATGG
AGAAGAATCTGTCACAGTGGGTTACATATGCTATAACCCTCACACAAAGAAATCAATTGTATCTCGTCATGTCATTTTTCATGAGACTATTTTTACTTTTGCCACATCTA
CCACCAAATCCACCTCCTCTTCCCCTCCCACTACCATTGACCCAACTCCATTACTCACTCTCCTAAATATCTCTCCATCCACTCCTCCGATCCCAAACTCGACTCACTTA
CCTACTGTTGACAATTCTGGTCCATCCATAGTTGAGTTCGATGATAATATTACTTGCGCTACTCGTTCTTGTCAGATTACAAATAATACAAATTTGATGCCTGAGCCTGC
AGATAACACTCAAACTACTGTATGTTTGATGCCTACTAATACTCACTCCATGCAAACTTGA
Protein sequenceShow/hide protein sequence
MAALNPPSQTPHNNHSNRGRAVHSFNHDVENIRQQHNPNFQPYSHVGSGQNTLNEGRFSCQICSKFGHIALDCYNRMNFSYQNRHSPAKLAVMSVNSINQLAVMSVNSIN
PEHSSDTSNNFLLSDSGCNVHMTNDLANLNLSTNYNGEESVTVGYICYNPHTKKSIVSRHVIFHETIFTFATSTTKSTSSSPPTTIDPTPLLTLLNISPSTPPIPNSTHL
PTVDNSGPSIVEFDDNITCATRSCQITNNTNLMPEPADNTQTTVCLMPTNTHSMQT