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Lag0032831 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032831
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:38076979..38077626
RNA-Seq ExpressionLag0032831
SyntenyLag0032831
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]7.3e-2642.16Show/hide
Query:  LVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT
        LVEWA  YV+ FRE   S+   GR T   E V+W  P    YK+N DASFL+    AGLGII+R+  GQVM SAT   +N++ VDMAE   AV+ L+L +
Subjt:  LVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT

Query:  DMGLGPAILETDSSRVFQILNREREDISEL-------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLE
         +G+ P ILETDSSR+F + ++  ED+SE                          GN+A H LAR A+      +WME  P  L+
Subjt:  DMGLGPAILETDSSRVFQILNREREDISEL-------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLE

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]5.4e-2139.05Show/hide
Query:  LVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT
        LVEWA  Y + FRE  +S+   GR T   E ++W+ P  G YK+N DASFL+    AGLGII+ +  GQVM +AT   +N++ VDMAE  AAV+ L+L +
Subjt:  LVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT

Query:  DMGLGPAILETDSSRVF---------QILNREREDISELGNQATHRLARLAIAQWSDEVWMETCPRYLE
        ++G+ PA+ +   +            Q L+     +   GN+A H LAR A+      +WME  P  L+
Subjt:  DMGLGPAILETDSSRVF---------QILNREREDISELGNQATHRLARLAIAQWSDEVWMETCPRYLE

XP_028115286.1 uncharacterized protein LOC114313136 isoform X1 [Camellia sinensis]6.2e-1736.25Show/hide
Query:  VVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISEL-
        V W AP NGW K+NFD +    L   G+G+++R+ LG+VM + +       D D AE YAA K++EL  D+GL    LE DS R+ ++L  E E +SE  
Subjt:  VVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISEL-

Query:  ------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND
                                GN   H LAR+A  Q   +VWME  P  L  I  +D
Subjt:  ------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND

XP_028115288.1 uncharacterized protein LOC114313136 isoform X3 [Camellia sinensis]6.2e-1736.25Show/hide
Query:  VVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISEL-
        V W AP NGW K+NFD +    L   G+G+++R+ LG+VM + +       D D AE YAA K++EL  D+GL    LE DS R+ ++L  E E +SE  
Subjt:  VVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISEL-

Query:  ------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND
                                GN   H LAR+A  Q   +VWME  P  L  I  +D
Subjt:  ------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND

XP_028115297.1 uncharacterized protein LOC114313136 isoform X6 [Camellia sinensis]6.2e-1736.25Show/hide
Query:  VVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISEL-
        V W AP NGW K+NFD +    L   G+G+++R+ LG+VM + +       D D AE YAA K++EL  D+GL    LE DS R+ ++L  E E +SE  
Subjt:  VVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISEL-

Query:  ------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND
                                GN   H LAR+A  Q   +VWME  P  L  I  +D
Subjt:  ------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND

TrEMBL top hitse value%identityAlignment
A0A6J1CIF1 uncharacterized protein LOC1110112373.5e-2642.16Show/hide
Query:  LVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT
        LVEWA  YV+ FRE   S+   GR T   E V+W  P    YK+N DASFL+    AGLGII+R+  GQVM SAT   +N++ VDMAE   AV+ L+L +
Subjt:  LVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT

Query:  DMGLGPAILETDSSRVFQILNREREDISEL-------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLE
         +G+ P ILETDSSR+F + ++  ED+SE                          GN+A H LAR A+      +WME  P  L+
Subjt:  DMGLGPAILETDSSRVFQILNREREDISEL-------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLE

A0A6J1DAR4 uncharacterized protein LOC1110189542.6e-2139.05Show/hide
Query:  LVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT
        LVEWA  Y + FRE  +S+   GR T   E ++W+ P  G YK+N DASFL+    AGLGII+ +  GQVM +AT   +N++ VDMAE  AAV+ L+L +
Subjt:  LVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT

Query:  DMGLGPAILETDSSRVF---------QILNREREDISELGNQATHRLARLAIAQWSDEVWMETCPRYLE
        ++G+ PA+ +   +            Q L+     +   GN+A H LAR A+      +WME  P  L+
Subjt:  DMGLGPAILETDSSRVF---------QILNREREDISELGNQATHRLARLAIAQWSDEVWMETCPRYLE

A0A7J7GYW5 Uncharacterized protein2.8e-1534.38Show/hide
Query:  VVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISEL-
        V W AP NGW K+NFD +    L   G+G+++R+ LG+VM + +       D D AE YAA K++EL  D+G     LE DS R+ + L  E E +SE  
Subjt:  VVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISEL-

Query:  ------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND
                                GN   H LAR+A  Q   +VWM   P  L  I  ++
Subjt:  ------------------------GNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND

A0A7N2KPS3 Reverse transcriptase domain-containing protein2.1e-1527.88Show/hide
Query:  MWSTRNKVRLQGADRPSGLVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVR
        +W  RN++RL      S +++ A+  ++A+ +  R        +    RV W  P +G  K+NFD +    +++AGLGI++RD  GQVM S +       
Subjt:  MWSTRNKVRLQGADRPSGLVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVR

Query:  DVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNRERED------------------------ISELGNQATHRLARLAIAQWSDEVWMETCPRY
          D+ E  AA K++    ++G    +LE DS  + + L +E +                         I  LGN   H LA+ A      +VWME  P +
Subjt:  DVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNRERED------------------------ISELGNQATHRLARLAIAQWSDEVWMETCPRY

Query:  LEDIVLND
        L  ++L D
Subjt:  LEDIVLND

V4UMR3 RNase H domain-containing protein (Fragment)2.8e-1531.45Show/hide
Query:  WRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISELG--
        W++P   WYKVN DA+  S   RAG+G++V +  G+VM ++  T    RD++  E  A    L+LV D+GL PAI+E+DS  V  ++N +     E+G  
Subjt:  WRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNREREDISELG--

Query:  ------------------------NQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND
                                N+  H L++LA+    ++VW+E  P  +   V  D
Subjt:  ------------------------NQATHRLARLAIAQWSDEVWMETCPRYLEDIVLND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0525Show/hide
Query:  MWSTRNKVRLQGA--DRPSGL-------VEWAKGYVVAFREV-GRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVML
        +W +RN++  +G   D P  L        EW+       RE+ G++SG      +    V W+AP   W K N DA++     R G+G I+R+  G V+ 
Subjt:  MWSTRNKVRLQGA--DRPSGL-------VEWAKGYVVAFREV-GRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVML

Query:  SATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNRE---------REDISEL---------------GNQATHRLARLAIA
                 ++V  AE  A   ++  ++       I E+D+  +  +LN +          EDI +L               GN+   R+AR +I+
Subjt:  SATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPAILETDSSRVFQILNRE---------REDISEL---------------GNQATHRLARLAIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCGACCCGAAATAAAGTTCGTCTTCAAGGGGCTGATAGGCCGAGTGGGCTAGTGGAATGGGCGAAGGGGTATGTGGTGGCTTTTCGTGAGGTTGGGAGGAGTAG
TGGGGAAGTGGGGCGGGAGACGGTTGGTCGGGAGAGGGTAGTGTGGCGGGCCCCGAGGAATGGTTGGTATAAGGTGAATTTTGATGCCTCTTTCCTTTCTCATTTGTCCA
GGGCCGGCCTAGGGATAATTGTGCGGGATCCTTTGGGCCAAGTAATGCTGTCGGCGACCTTTACTAAGGATAATGTGAGAGATGTTGACATGGCTGAAGGATATGCGGCC
GTGAAAAGTTTGGAGTTGGTGACAGATATGGGTTTGGGTCCAGCAATTCTTGAGACGGATTCGAGTAGAGTATTCCAGATCCTTAATCGAGAACGTGAGGATATTTCTGA
GCTAGGGAATCAGGCGACGCACCGATTAGCGAGGTTAGCAATAGCCCAGTGGAGTGATGAGGTTTGGATGGAGACTTGTCCTAGGTATCTGGAGGACATAGTTTTGAACG
ATTCAATGTACATGGAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCGACCCGAAATAAAGTTCGTCTTCAAGGGGCTGATAGGCCGAGTGGGCTAGTGGAATGGGCGAAGGGGTATGTGGTGGCTTTTCGTGAGGTTGGGAGGAGTAG
TGGGGAAGTGGGGCGGGAGACGGTTGGTCGGGAGAGGGTAGTGTGGCGGGCCCCGAGGAATGGTTGGTATAAGGTGAATTTTGATGCCTCTTTCCTTTCTCATTTGTCCA
GGGCCGGCCTAGGGATAATTGTGCGGGATCCTTTGGGCCAAGTAATGCTGTCGGCGACCTTTACTAAGGATAATGTGAGAGATGTTGACATGGCTGAAGGATATGCGGCC
GTGAAAAGTTTGGAGTTGGTGACAGATATGGGTTTGGGTCCAGCAATTCTTGAGACGGATTCGAGTAGAGTATTCCAGATCCTTAATCGAGAACGTGAGGATATTTCTGA
GCTAGGGAATCAGGCGACGCACCGATTAGCGAGGTTAGCAATAGCCCAGTGGAGTGATGAGGTTTGGATGGAGACTTGTCCTAGGTATCTGGAGGACATAGTTTTGAACG
ATTCAATGTACATGGAGGCATGA
Protein sequenceShow/hide protein sequence
MWSTRNKVRLQGADRPSGLVEWAKGYVVAFREVGRSSGEVGRETVGRERVVWRAPRNGWYKVNFDASFLSHLSRAGLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAA
VKSLELVTDMGLGPAILETDSSRVFQILNREREDISELGNQATHRLARLAIAQWSDEVWMETCPRYLEDIVLNDSMYMEA