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Lag0032837 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032837
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr11:38125194..38126366
RNA-Seq ExpressionLag0032837
SyntenyLag0032837
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU30026.1 hypothetical protein TSUD_161120 [Trifolium subterraneum]1.1e-1245.65Show/hide
Query:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPIGMGT
        MG  LR +V ID+T+PL RG +V+   K  +V+ K  YERLP  C+ CGRIGH L++C+EI   E EG          FG W+RA+P+   T
Subjt:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPIGMGT

KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]2.6e-1439.6Show/hide
Query:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGLFGDWMRAAPIGMGTPNQGNQEQRREYSWGRG
        +G  LR++VK+++T+PL RG +VQ+  +G + W    YE LP+FCY CG I H  +EC   +  +E+  FG W+RA   G  T ++G        S G G
Subjt:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGLFGDWMRAAPIGMGTPNQGNQEQRREYSWGRG

Query:  R
        R
Subjt:  R

KAG0532780.1 hypothetical protein BDA96_04G136500, partial [Sorghum bicolor]1.1e-1243.43Show/hide
Query:  LRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEE-GLFGDWMRAAPIGMGTPNQGNQEQRREYSWGRGRG
        LRI+VKID+ +PL RG+LV+     E+ W  I YE +P+FCY CG +GH  KEC+  +  E     FG+WMR  P    +  +G  +QR ++S GR  G
Subjt:  LRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEE-GLFGDWMRAAPIGMGTPNQGNQEQRREYSWGRGRG

PNX56720.1 hypothetical protein L195_g058346 [Trifolium pratense]1.1e-1244.34Show/hide
Query:  GNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPIGMGTPNQGNQEQR
        G  LR++V ID+T+PL RG +++   +  +V+ K  YERLP FC+ CGRIGH LKECEE  + EE G          FG W+RA+P+      + N E R
Subjt:  GNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPIGMGTPNQGNQEQR

Query:  REYSWG
        +E S G
Subjt:  REYSWG

PNY15174.1 ribonuclease H, partial [Trifolium pratense]1.1e-1243.18Show/hide
Query:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPI
        +G  LR++V ID+ +PL RG ++    K   V+ K  YERLP+FCY CGRIGH +K+CEE+   EE+G          +G W++A+P+
Subjt:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPI

TrEMBL top hitse value%identityAlignment
A0A2K3JRR7 CCHC-type domain-containing protein5.4e-1344.34Show/hide
Query:  GNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPIGMGTPNQGNQEQR
        G  LR++V ID+T+PL RG +++   +  +V+ K  YERLP FC+ CGRIGH LKECEE  + EE G          FG W+RA+P+      + N E R
Subjt:  GNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPIGMGTPNQGNQEQR

Query:  REYSWG
        +E S G
Subjt:  REYSWG

A0A2K3PIT6 Ribonuclease H (Fragment)5.4e-1343.18Show/hide
Query:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPI
        +G  LR++V ID+ +PL RG ++    K   V+ K  YERLP+FCY CGRIGH +K+CEE+   EE+G          +G W++A+P+
Subjt:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPI

A0A2Z6MBL0 Uncharacterized protein5.4e-1345.65Show/hide
Query:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPIGMGT
        MG  LR +V ID+T+PL RG +V+   K  +V+ K  YERLP  C+ CGRIGH L++C+EI   E EG          FG W+RA+P+   T
Subjt:  MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGL---------FGDWMRAAPIGMGT

A0A803P119 Uncharacterized protein1.1e-1340.66Show/hide
Query:  GNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEG-----LFGDWMRAAPI---GMGTP
        G  +RI++ +DVT+PL RG L+++    +++W+ + YE+LPD CYKCGR+GHT   C E +  E+ G      +G WM+  P+   G G P
Subjt:  GNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEG-----LFGDWMRAAPI---GMGTP

A0A803PVI8 Uncharacterized protein9.2e-1337.62Show/hide
Query:  GNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEG-----LFGDWMRAAPIGMGTPNQGNQEQRREYS
        G  LR++V+IDV++PL RG  V      +E+W+   YERLPDFCY+CG IGH   +C   +   ++G     L+G WM  +P+   + ++  Q+  +E  
Subjt:  GNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEG-----LFGDWMRAAPIGMGTPNQGNQEQRREYS

Query:  W
        W
Subjt:  W

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACTCCCTGCGAATTCAAGTTAAGATTGATGTAACAGAACCACTCACCAGAGGCCTGCTGGTCCAAGTTGGGTCCAAAGGAGAGGAAGTGTGGATGAAAATCAC
CTACGAACGCCTCCCGGACTTCTGCTACAAATGTGGGAGAATCGGTCACACACTAAAAGAATGCGAAGAGATAATCAACCCGGAAGAAGAGGGCCTTTTTGGAGACTGGA
TGAGAGCAGCACCGATAGGGATGGGAACACCAAACCAAGGCAACCAAGAACAGAGAAGGGAATATAGTTGGGGCAGAGGCAGGGGAAGAAGAGGGGGCAACTCAAGATCC
CATCATCAACAACAAAGGGACTGGTTTGATCGCAGAAAAAATGACTCGAAGAAAGAAGAAAGAAACCAAACTCACCAGCCAACCCTAGCAATGGAGGTGGATGAACCAAT
AAGTATAGAAACAGGGCCAAAGCAGACTCAACGAGAAGAGGGAAAAACAAACATCTCACAAAGCTCAACCTCGCCGGAAAACGGGGAGGAAGATGACCGGAATAGTGAGG
AGGTCAGGCAACGCCGGTGGACGAACAAAACGGGAACAGAAATCGAGGAAGCTAGGGAGGAGTGCCAGAACAACAAAGTGGTGTCAGAAGAAGCAGGGAAAATAGCCGTT
GGAATAGAAAACAGTGAAAATACCCAAAAGGAAGAAGTGTGTAAGAAGGAAAAAGAGAAAAATAGGAATATTCTAAGCGGTGACAGGTCAAAAGACAATATGACTACTAA
GGTAGGAAAGTGGGACCCAGGATCACGTGTTTCCAAGTTAGAAAATCAAAAGGAAAACAAAGCCCAGCAGGAAACAGGAGAAAAGGCCCACCAACAAACCTCCAGATATG
AAGAAAAGTCCCACCAACAAACCTCCAGATCTGAAGAAAAAGAAAGCTTTTCTCCAAAGGACAGAGGGAAATTCGAAACAAAAAACAAACTATCCAGGAAATGGAAGAGG
CTCGCGCGGGCTGATCCAAAAAGTCAAAATAGAGTCGAGAACAATGAAATTCACAAGAGGAAAATGGAAACTACCTGTGAGGAGGAGTCAAGGGAGGAGACAAAGAGGAA
GCGAACAACGTACTTCGAAGTAGTCGAAGGGATATCGGCGGAGGCTGGATACCAGCCCCACCGGATGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAACTCCCTGCGAATTCAAGTTAAGATTGATGTAACAGAACCACTCACCAGAGGCCTGCTGGTCCAAGTTGGGTCCAAAGGAGAGGAAGTGTGGATGAAAATCAC
CTACGAACGCCTCCCGGACTTCTGCTACAAATGTGGGAGAATCGGTCACACACTAAAAGAATGCGAAGAGATAATCAACCCGGAAGAAGAGGGCCTTTTTGGAGACTGGA
TGAGAGCAGCACCGATAGGGATGGGAACACCAAACCAAGGCAACCAAGAACAGAGAAGGGAATATAGTTGGGGCAGAGGCAGGGGAAGAAGAGGGGGCAACTCAAGATCC
CATCATCAACAACAAAGGGACTGGTTTGATCGCAGAAAAAATGACTCGAAGAAAGAAGAAAGAAACCAAACTCACCAGCCAACCCTAGCAATGGAGGTGGATGAACCAAT
AAGTATAGAAACAGGGCCAAAGCAGACTCAACGAGAAGAGGGAAAAACAAACATCTCACAAAGCTCAACCTCGCCGGAAAACGGGGAGGAAGATGACCGGAATAGTGAGG
AGGTCAGGCAACGCCGGTGGACGAACAAAACGGGAACAGAAATCGAGGAAGCTAGGGAGGAGTGCCAGAACAACAAAGTGGTGTCAGAAGAAGCAGGGAAAATAGCCGTT
GGAATAGAAAACAGTGAAAATACCCAAAAGGAAGAAGTGTGTAAGAAGGAAAAAGAGAAAAATAGGAATATTCTAAGCGGTGACAGGTCAAAAGACAATATGACTACTAA
GGTAGGAAAGTGGGACCCAGGATCACGTGTTTCCAAGTTAGAAAATCAAAAGGAAAACAAAGCCCAGCAGGAAACAGGAGAAAAGGCCCACCAACAAACCTCCAGATATG
AAGAAAAGTCCCACCAACAAACCTCCAGATCTGAAGAAAAAGAAAGCTTTTCTCCAAAGGACAGAGGGAAATTCGAAACAAAAAACAAACTATCCAGGAAATGGAAGAGG
CTCGCGCGGGCTGATCCAAAAAGTCAAAATAGAGTCGAGAACAATGAAATTCACAAGAGGAAAATGGAAACTACCTGTGAGGAGGAGTCAAGGGAGGAGACAAAGAGGAA
GCGAACAACGTACTTCGAAGTAGTCGAAGGGATATCGGCGGAGGCTGGATACCAGCCCCACCGGATGCAATGA
Protein sequenceShow/hide protein sequence
MGNSLRIQVKIDVTEPLTRGLLVQVGSKGEEVWMKITYERLPDFCYKCGRIGHTLKECEEIINPEEEGLFGDWMRAAPIGMGTPNQGNQEQRREYSWGRGRGRRGGNSRS
HHQQQRDWFDRRKNDSKKEERNQTHQPTLAMEVDEPISIETGPKQTQREEGKTNISQSSTSPENGEEDDRNSEEVRQRRWTNKTGTEIEEAREECQNNKVVSEEAGKIAV
GIENSENTQKEEVCKKEKEKNRNILSGDRSKDNMTTKVGKWDPGSRVSKLENQKENKAQQETGEKAHQQTSRYEEKSHQQTSRSEEKESFSPKDRGKFETKNKLSRKWKR
LARADPKSQNRVENNEIHKRKMETTCEEESREETKRKRTTYFEVVEGISAEAGYQPHRMQ