; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032908 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032908
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:38806223..38807161
RNA-Seq ExpressionLag0032908
SyntenyLag0032908
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7837133.1 uncharacterized protein G2W53_005615 [Senna tora]2.4e-1629.71Show/hide
Query:  NKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLI-----NKII
        N  G F+VKSAY +V    +   +  +   R S  WK IW  K  P+ +   W+    I+PT  N++++G+ +   C +CG   E TSH +      K +
Subjt:  NKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLI-----NKII

Query:  HNNIIPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQA
         +N +  A     T EV + E       +++ R R+ + +  WE P  ++ K+N DA  F   G+GGIG +VR+  GS +    K I N     +LEA A
Subjt:  HNNIIPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQA

Query:  ILEGLNCIKDTCKQRQIPLVIESDTLEVIKVLNKEEEDL
         L+GL   K+    R   +++E +  +V+ +++   ++L
Subjt:  ILEGLNCIKDTCKQRQIPLVIESDTLEVIKVLNKEEEDL

OMO52016.1 reverse transcriptase [Corchorus capsularis]3.8e-1424.33Show/hide
Query:  RDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHL--
        RD +     + G F+VKSAY++ +D     ++ Q  R ++   WK +WS + +P+     W+++ +I+PTK N+  +G+ +   C +CGK  E+  H+  
Subjt:  RDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHL--

Query:  ---INKIIHNNIIPA-------------------AKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVR
            ++++ + + P                    AKA  I     + + + T     N+R ++   Q TW  P     K+N+D  +    G  G+G ++R
Subjt:  ---INKIIHNNIIPA-------------------AKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVR

Query:  DSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIPLVIESDTLEVIKVLNKEE
        DS G  +    + +         E  A+L G     +   +R    + ESD+L  I  +NK++
Subjt:  DSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIPLVIESDTLEVIKVLNKEE

XP_011470502.1 PREDICTED: uncharacterized protein LOC105353223 [Fragaria vesca subsp. vesca]1.2e-1525.21Show/hide
Query:  NKKGTFTVKSAYHLVKDFNY--GLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLINKIIHNN
        ++KG ++V+S YH+ +   +   + +S S        WK +W +   P+ ++  W+I+ +++PTK  ++ KG+ +   C  CG+ KE   H+       N
Subjt:  NKKGTFTVKSAYHLVKDFNY--GLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLINKIIHNN

Query:  IIPAAKALQITIE----VNIKERIFTFDKQQ-NSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEA
         +    +L +T      + IK  +  + K    +  +S+ +   W  P S + K+N D  + E   RGG+G +VRD+ G        A   P P+ +   
Subjt:  IIPAAKALQITIE----VNIKERIFTFDKQQ-NSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEA

Query:  QAILEGLNC-IKDTCKQRQIPLVIESDTLEVIKVLNKEEEDL
           +E L   +    +Q    +  ESD   ++KV   ++EDL
Subjt:  QAILEGLNC-IKDTCKQRQIPLVIESDTLEVIKVLNKEEEDL

XP_030930729.1 uncharacterized protein LOC115956517 [Quercus lobata]1.0e-1426.48Show/hide
Query:  DEITRFPNKKGTFTVKSAYHLVKDF----NYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSH
        D I    NKKG+F VKSAY++ K      ++G E+S  D   S   WK +W L    + ++  W++  + IPT  N+  KGI +  +C IC K  ET  H
Subjt:  DEITRFPNKKGTFTVKSAYHLVKDF----NYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSH

Query:  LI--------NKIIHNN---IIPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFG
         I        N++++ N   +      L I +  + KE      +++ ++ R+      W+ P  + + +N D     K+G  GIG I+RD     +   
Subjt:  LI--------NKIIHNN---IIPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFG

Query:  MKAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIPLVIESDTLEVIK-VLNKE
         K ++  + ++  EA A+ +G+   K+    +   +++E D+++ ++ + NK+
Subjt:  MKAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIPLVIESDTLEVIK-VLNKE

XP_042974784.1 uncharacterized protein LOC122306423 [Carya illinoinensis]5.7e-1828.97Show/hide
Query:  SSRDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSH-
        +S D +     K G+F+VKSAY  ++  ++ L    S     ++FWKS+W LK   + K+  W+   + +PT  N++ + +   A+C +C +G E  +H 
Subjt:  SSRDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSH-

Query:  LINKIIHNNI-----IPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQAT-WERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAIT
        L NK ++ NI     +    AL +  E    E++  FD      +  ++S+   W  P S+  KLN D   F +    G+G ++R+  G  +    K   
Subjt:  LINKIIHNNI-----IPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQAT-WERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAIT

Query:  NPWPIKMLEAQAILEGLNCIKDTCKQRQIP-LVIESDTLEVIKVLNKEEEDL
             + +EA A+L GL      C Q  IP L++E+D L ++  LN   E L
Subjt:  NPWPIKMLEAQAILEGLNCIKDTCKQRQIP-LVIESDTLEVIKVLNKEEEDL

TrEMBL top hitse value%identityAlignment
A0A1R3G1P9 Reverse transcriptase1.8e-1424.33Show/hide
Query:  RDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHL--
        RD +     + G F+VKSAY++ +D     ++ Q  R ++   WK +WS + +P+     W+++ +I+PTK N+  +G+ +   C +CGK  E+  H+  
Subjt:  RDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHL--

Query:  ---INKIIHNNIIPA-------------------AKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVR
            ++++ + + P                    AKA  I     + + + T     N+R ++   Q TW  P     K+N+D  +    G  G+G ++R
Subjt:  ---INKIIHNNIIPA-------------------AKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVR

Query:  DSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIPLVIESDTLEVIKVLNKEE
        DS G  +    + +         E  A+L G     +   +R    + ESD+L  I  +NK++
Subjt:  DSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIPLVIESDTLEVIKVLNKEE

A0A1R3IUT4 Reverse transcriptase4.5e-1324.68Show/hide
Query:  GTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLINKIIHNNIIPAA
        G++TV+S Y++ +      +    DR   S  W+ IWS   LP+ K   W+++ DI+PTK  +Q +G+ I  +C +CG  + +  H+  +   +  +   
Subjt:  GTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLINKIIHNNIIPAA

Query:  KALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCI
            + + +   E   +F + + S+T   + +  W  P   + K+N+DA + +      +G + RD+ G  +  G+  ITN       E   I  GL   
Subjt:  KALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCI

Query:  KDTCKQRQIPLVIESDTLEVIKVLNKEEEDL
                +   +ESD+L     LN++   L
Subjt:  KDTCKQRQIPLVIESDTLEVIKVLNKEEEDL

A0A6J5UV01 Reverse transcriptase domain-containing protein3.1e-1428.02Show/hide
Query:  GTFTVKSAY----HLVKDFNYGL----EASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLI----
        G +TV+S Y     L ++   G     E+SQ D+ R    WKSIW L+  P+ +  +WK   +++  K N+   GI ++ +CA+CG+  E+   ++    
Subjt:  GTFTVKSAY----HLVKDFNYGL----EASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLI----

Query:  -----NKIIHNNIIPAAKALQITIEVN-IKERIFTFDKQQ-------NSRTRSQVSQA----TWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGST
              ++ H N I     ++  + V     ++  F   Q       N   R    QA    +W +      K+N DA W  +   GG+GW+VRDS G  
Subjt:  -----NKIIHNNIIPAAKALQITIEVN-IKERIFTFDKQQ-------NSRTRSQVSQA----TWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGST

Query:  MCFGMKAITNPWPIKMLEAQAILEG-LNCIKDTCKQRQIPLVIESDTLEVIKVLNKE
        +  G K          +EA+AI E  L C++    +    L +ESD+L++I++L  E
Subjt:  MCFGMKAITNPWPIKMLEAQAILEG-LNCIKDTCKQRQIPLVIESDTLEVIKVLNKE

A0A6P9E8H5 uncharacterized protein LOC1183476981.8e-1429.3Show/hide
Query:  RDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLIN
        +D++    +K G F+V SAY L  D    L+   S        W  IW+L      K+ +WK+  +++PTK N+  + I  + SC IC    ET  H I 
Subjt:  RDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLIN

Query:  KIIHNNIIPA----------AKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTM---CFGM
        +    N I A           KA +  +E    + +    KQ   R R  +    WE+P +   K+N DA    KD R G+G I+RD  G  +   C   
Subjt:  KIIHNNIIPA----------AKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTM---CFGM

Query:  KAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIP-LVIESDTLEVIKVLNKEEEDL
        + + NP    + E+ A+   L    D C +  I   + E D   VI  +++E EDL
Subjt:  KAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIP-LVIESDTLEVIKVLNKEEEDL

Q75M12 Reverse transcriptase domain-containing protein5.3e-1425Show/hide
Query:  DEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLINK
        D I   P+K G F+V+SAY L          S S   R +  W+ IW      + ++  W++ ++ + T  N + + +     C IC + KE   H + +
Subjt:  DEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLINK

Query:  IIHNNIIPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEA
         +H      A +L + +E         F K    +         WERP++   KLN D  +     +GGIG I+R+  G+ +    +++ +       E 
Subjt:  IIHNNIIPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEA

Query:  QAILEGLNCIKDTCKQRQIPLVIESDTLEVIKVLNKEEED
         A +EGL+          +P+ +E+D   VI++LN  ++D
Subjt:  QAILEGLNCIKDTCKQRQIPLVIESDTLEVIKVLNKEEED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.5e-0530.53Show/hide
Query:  WERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQAILEGLN-CIKDTCKQRQIPLVIESDTLEVIKVLNKEE
        W+ P     K N+DA W  ++ R GIGWI+R+ +G  +  G +A+  P    +LEA+  LE L   +    +     ++ ESD   ++ +LN ++
Subjt:  WERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQAILEGLN-CIKDTCKQRQIPLVIESDTLEVIKVLNKEE

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.8e-0435.85Show/hide
Query:  IWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLI
        IWSLK  P+ K+ +WK + + +P  A + S+ I+I+  C  C +  ET +H++
Subjt:  IWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLI

AT4G29090.1 Ribonuclease H-like superfamily protein4.1e-0635.19Show/hide
Query:  TRSQVSQAT---WERPKSNQW-KLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIPLVI-ESDTLEV
        T+ QV++++   W RP  +QW K N+DA W   + R GIGW++R+  G     G +A+  P    +LEA+  LE +     +  + Q   VI ESD+  +
Subjt:  TRSQVSQAT---WERPKSNQW-KLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCIKDTCKQRQIPLVI-ESDTLEV

Query:  IKVLNKEE
        I++LN +E
Subjt:  IKVLNKEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACGGGAAACAAGAGTTCTAGAGACGAAATAACTCGGTTCCCAAACAAGAAAGGCACATTCACGGTGAAAAGTGCCTATCACCTAGTCAAAGACTTCAACTACGG
ACTCGAGGCGTCACAATCAGACAGAATGAGATCTTCTTTATTTTGGAAATCCATATGGTCTTTAAAGGCTCTCCCTAGATCAAAAGTCGGTGTTTGGAAGATAGTGACCG
ATATTATCCCCACAAAGGCTAATATCCAATCCAAAGGGATTGCTATTCAAGCTTCGTGTGCAATCTGTGGGAAAGGGAAGGAAACCACATCCCACCTAATAAACAAGATA
ATTCACAACAATATTATCCCAGCAGCGAAAGCTTTGCAAATTACCATTGAAGTGAATATAAAGGAGCGAATCTTTACCTTCGACAAGCAACAGAACTCGAGAACGAGGAG
CCAAGTGAGTCAGGCTACGTGGGAGAGACCTAAATCGAACCAGTGGAAGCTAAATTCGGATGCTGGCTGGTTCGAGAAAGACGGTCGCGGAGGCATTGGTTGGATCGTGC
GTGACTCAACTGGATCCACGATGTGTTTTGGAATGAAGGCCATCACCAATCCGTGGCCAATTAAAATGTTGGAGGCTCAAGCGATCCTTGAAGGCCTCAATTGCATCAAG
GACACCTGCAAGCAACGTCAAATTCCCCTGGTTATCGAATCTGACACGTTGGAGGTCATAAAAGTGTTGAACAAAGAAGAGGAAGACTTAATTATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACGGGAAACAAGAGTTCTAGAGACGAAATAACTCGGTTCCCAAACAAGAAAGGCACATTCACGGTGAAAAGTGCCTATCACCTAGTCAAAGACTTCAACTACGG
ACTCGAGGCGTCACAATCAGACAGAATGAGATCTTCTTTATTTTGGAAATCCATATGGTCTTTAAAGGCTCTCCCTAGATCAAAAGTCGGTGTTTGGAAGATAGTGACCG
ATATTATCCCCACAAAGGCTAATATCCAATCCAAAGGGATTGCTATTCAAGCTTCGTGTGCAATCTGTGGGAAAGGGAAGGAAACCACATCCCACCTAATAAACAAGATA
ATTCACAACAATATTATCCCAGCAGCGAAAGCTTTGCAAATTACCATTGAAGTGAATATAAAGGAGCGAATCTTTACCTTCGACAAGCAACAGAACTCGAGAACGAGGAG
CCAAGTGAGTCAGGCTACGTGGGAGAGACCTAAATCGAACCAGTGGAAGCTAAATTCGGATGCTGGCTGGTTCGAGAAAGACGGTCGCGGAGGCATTGGTTGGATCGTGC
GTGACTCAACTGGATCCACGATGTGTTTTGGAATGAAGGCCATCACCAATCCGTGGCCAATTAAAATGTTGGAGGCTCAAGCGATCCTTGAAGGCCTCAATTGCATCAAG
GACACCTGCAAGCAACGTCAAATTCCCCTGGTTATCGAATCTGACACGTTGGAGGTCATAAAAGTGTTGAACAAAGAAGAGGAAGACTTAATTATCTGA
Protein sequenceShow/hide protein sequence
MSTGNKSSRDEITRFPNKKGTFTVKSAYHLVKDFNYGLEASQSDRMRSSLFWKSIWSLKALPRSKVGVWKIVTDIIPTKANIQSKGIAIQASCAICGKGKETTSHLINKI
IHNNIIPAAKALQITIEVNIKERIFTFDKQQNSRTRSQVSQATWERPKSNQWKLNSDAGWFEKDGRGGIGWIVRDSTGSTMCFGMKAITNPWPIKMLEAQAILEGLNCIK
DTCKQRQIPLVIESDTLEVIKVLNKEEEDLII