CuGenDBv2

Gene ID	Lag0032910
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon gag protein
Genome location	chr11:38815490..38817009
RNA-Seq Expression	Lag0032910
Synteny	Lag0032910
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

2.4e-33

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR  VF R+SMA  EEENQC MST  R SAF+RLS+STSKK R STS F+RLK+TNDQ +R+M + + K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K+HS +PSRMKRK SV INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

8.3e-34

68.8

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS F+RLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K+HS +PSRMKRK SV INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.1e-33

67.2

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EEENQC MST TR SAF+RLS+S SKK R STS F+RLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K++S +PSR+KRK S+ INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]

5.4e-33

67.2

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS F+RLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K+H+ +PSRMKRK SV INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]

5.4e-33

67.2

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS F+RLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K+H+ +PSRMKRK SV INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZJ7 Retrotransposon gag protein

1.2e-33

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR  VF R+SMA  EEENQC MST  R SAF+RLS+STSKK R STS F+RLK+TNDQ +R+M + + K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K+HS +PSRMKRK SV INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein

4.0e-34

68.8

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS F+RLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K+HS +PSRMKRK SV INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7U974 Retrotransposon gag protein

2.0e-33

67.2

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EEENQC MST TR SAF+RLS+S SKK R STS F+RLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K++S +PSR+KRK S+ INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7UI09 Retrotransposon gag protein

2.6e-33

67.2

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS F+RLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K+H+ +PSRMKRK SV INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3BBF9 Gag protease polyprotein

2.6e-33

67.2

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Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTS+FDRIKP TTR  VF R+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS F+RLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSIPSRMKRKFSVLINTEGSL
         K+HS +PSRMKRK SV INTEGSL
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAACTTTGCGACTTCGTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCC
TTCGGTATTCCATAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAA
AGAAAAGTCGATCTTCAACATCTGTCTTTGAACGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGT
GACAAGAAGCTTCATAGTAGCATCCCATCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTGGGGGCAACACAGCGAATGGAAGTTGCT
TCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAAATTCGAAGGTTCTCACGCGCTTTGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTC
ACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGATCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCG
CTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCC
TAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGCTGCAGTTCATTCTCTCCACGTTCAAAGGTTCTCACGTG
CTTCGGTGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTTCTTCTCCCTA
AGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAGGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTC
TCACGCGCTGTGA

mRNA sequence

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Protein sequence

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MNFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFERLKVTNDQPKRKMNNLELKLFDEVNS
DKKLHSSIPSRMKRKFSVLINTEGSLKWGQHSEWKLLPPSSKVLTRFAAVPSPKIRRFSRALLQFLPPKFEGSHALRCSSFPQVRRFSRRFAADPSSKFEGSHIASLRAA
LRCSSFLQVRRFSHASLQFLLPNFEGSHALRCNSFLPKFEGSHVASLQFLPPSSKVFMRFAAVHSLHVQRFSRASVKFLPPSSKVLTRFAAVPSSKFEGSHALRCSFFSL
SSKVLTRFDAVPSSLGSKVLTRFAAVPSSKFEGFEGSHAL

Lag0032910 (gene) of Sponge gourd (AG-4) v1 genome