; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0033003 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033003
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:39829948..39831357
RNA-Seq ExpressionLag0033003
SyntenyLag0033003
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.2e-1540.68Show/hide
Query:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS
        S  N   +LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  +    W  + P D+ +LI 
Subjt:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS

Query:  FAILGHPFRKDKKLIWRN
          I     R  K LI  N
Subjt:  FAILGHPFRKDKKLIWRN
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-1540.38Show/hide
Query:  MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGD
        + + ++S  N    LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  Q    W  + P D
Subjt:  MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGD

Query:  IYTL
        + +L
Subjt:  IYTL
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1439.83Show/hide
Query:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS
        S  N   +LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  +    W    P D+ +L+ 
Subjt:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS

Query:  FAILGHPFRKDKKLIWRN
          I     R  K LI  N
Subjt:  FAILGHPFRKDKKLIWRN
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-1540.38Show/hide
Query:  MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGD
        + + ++S  N    LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  Q    W  + P D
Subjt:  MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGD

Query:  IYTL
        + +L
Subjt:  IYTL
TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1439.83Show/hide
Query:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS
        S  N   +LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  +    W    P D+ +L+ 
Subjt:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS

Query:  FAILGHPFRKDKKLIWRN
          I     R  K LI  N
Subjt:  FAILGHPFRKDKKLIWRN
TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein2.0e-1540.68Show/hide
Query:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS
        S  N   +LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  +    W  + P D+ +LI 
Subjt:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS

Query:  FAILGHPFRKDKKLIWRN
          I     R  K LI  N
Subjt:  FAILGHPFRKDKKLIWRN
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein2.7e-1540.38Show/hide
Query:  MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGD
        + + ++S  N    LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  Q    W  + P D
Subjt:  MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGD

Query:  IYTL
        + +L
Subjt:  IYTL
A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein2.7e-1540.38Show/hide
Query:  MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGD
        + + ++S  N    LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  Q    W  + P D
Subjt:  MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGD

Query:  IYTL
        + +L
Subjt:  IYTL
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein7.8e-1539.83Show/hide
Query:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS
        S  N   +LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  +    W    P D+ +L+ 
Subjt:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS

Query:  FAILGHPFRKDKKLIWRN
          I     R  K LI  N
Subjt:  FAILGHPFRKDKKLIWRN
A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein7.8e-1539.83Show/hide
Query:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS
        S  N   +LY  LWK   PKK KFF+W + H CINTAD +Q+R P   LSP+ C MC K+ E   HLF  C ++   W+  +    W    P D+ +L+ 
Subjt:  SSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLIS

Query:  FAILGHPFRKDKKLIWRN
          I     R  K LI  N
Subjt:  FAILGHPFRKDKKLIWRN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.1e-0430.99Show/hide
Query:  DLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFW
        DL  ++W  PI  K+K F+W      + T + +  R  G  + PS C  C + +E+  H   +C FA+  W
Subjt:  DLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGATGGCCTCCTCCTCTCAAAATAATAGAACAGATCTTTATGGACAGTTGTGGAAGGGTCCTATCCCGAAAAAAGTCAAATTCTTTGTTTGGGAGATTAGTCA
TGCTTGTATCAATACAGCAGACATTATCCAAAGAAGGAATCCTGGATCTCATCTTTCCCCTAGCTGTTGTATCATGTGTTTTAAAGCGAGTGAGACCCAAGCTCACTTAT
TTAGTAGCTGTGAATTTGCCTCTGCTTTCTGGAATTATCTTCAACAAGCTTTTGGATGGCAATTTGCCCGCCCCGGTGATATCTACACTCTTATATCTTTTGCTATTCTT
GGTCACCCCTTTAGGAAGGATAAAAAGCTCATTTGGCGGAATTTTTTTTCAGGGAGGAACCAGTTCACCAGACTGAGGTTGGAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGATGGCCTCCTCCTCTCAAAATAATAGAACAGATCTTTATGGACAGTTGTGGAAGGGTCCTATCCCGAAAAAAGTCAAATTCTTTGTTTGGGAGATTAGTCA
TGCTTGTATCAATACAGCAGACATTATCCAAAGAAGGAATCCTGGATCTCATCTTTCCCCTAGCTGTTGTATCATGTGTTTTAAAGCGAGTGAGACCCAAGCTCACTTAT
TTAGTAGCTGTGAATTTGCCTCTGCTTTCTGGAATTATCTTCAACAAGCTTTTGGATGGCAATTTGCCCGCCCCGGTGATATCTACACTCTTATATCTTTTGCTATTCTT
GGTCACCCCTTTAGGAAGGATAAAAAGCTCATTTGGCGGAATTTTTTTTCAGGGAGGAACCAGTTCACCAGACTGAGGTTGGAGAAGTAG
Protein sequenceShow/hide protein sequence
MKQMASSSQNNRTDLYGQLWKGPIPKKVKFFVWEISHACINTADIIQRRNPGSHLSPSCCIMCFKASETQAHLFSSCEFASAFWNYLQQAFGWQFARPGDIYTLISFAIL
GHPFRKDKKLIWRNFFSGRNQFTRLRLEK