CuGenDBv2

Gene ID	Lag0033150
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr11:41229715..41231734
RNA-Seq Expression	Lag0033150
Synteny	Lag0033150
Gene Ontology terms	NA
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049700.1 T4.5 [Cucumis melo var. makuwa]

6.0e-20

48.78

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Query:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI
        + ST   SS +++ SL SPI LL+NI NLI++RLDS+N+VLW FQ++++LK +KL+GF+DG+ P P +T      S    + NP+YE W  KDQAL+T+I
Subjt:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI

Query:  NANLSLSLPALSYVVGCVIGEEI
        NA  +LS  AL+YVVG    +++
Subjt:  NANLSLSLPALSYVVGCVIGEEI

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]

8.4e-22

51.69

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Query:  ESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLS
        +S+ ++SS S E +L SPIVLL+NI NLI+++LDS+NYVLW FQ+++LLK +KLFGF+DG+ P P            NP+Y+ WF KDQAL+T+INA  +
Subjt:  ESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLS

Query:  LSLPALSYVVGCVIGEEI
        LS  AL+YVVG    +++
Subjt:  LSLPALSYVVGCVIGEEI

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.4e-22

51.69

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Query:  ESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLS
        +S+ ++SS S E +L SPIVLL+NI NLI+++LDS+NYVLW FQ+++LLK +KLFGF+DG+ P P            NP+Y+ WF KDQAL+T+INA  +
Subjt:  ESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLS

Query:  LSLPALSYVVGCVIGEEI
        LS  AL+YVVG    +++
Subjt:  LSLPALSYVVGCVIGEEI

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]

6.0e-20

48.78

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Query:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI
        + ST   SS +++ SL SPI LL+NI NLI++RLDS+N+VLW FQ++++LK +KL+GF+DG+ P P +T      S    + NP+YE W  KDQAL+T+I
Subjt:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI

Query:  NANLSLSLPALSYVVGCVIGEEI
        NA  +LS  AL+YVVG    +++
Subjt:  NANLSLSLPALSYVVGCVIGEEI

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]

6.0e-20

48.78

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Query:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI
        + ST   SS +++ SL SPI LL+NI NLI++RLDS+N+VLW FQ++++LK +KL+GF+DG+ P P +T      S    + NP+YE W  KDQAL+T+I
Subjt:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI

Query:  NANLSLSLPALSYVVGCVIGEEI
        NA  +LS  AL+YVVG    +++
Subjt:  NANLSLSLPALSYVVGCVIGEEI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BI58 uncharacterized protein LOC103490319 isoform X2

2.9e-20

48.78

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Query:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI
        + ST   SS +++ SL SPI LL+NI NLI++RLDS+N+VLW FQ++++LK +KL+GF+DG+ P P +T      S    + NP+YE W  KDQAL+T+I
Subjt:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI

Query:  NANLSLSLPALSYVVGCVIGEEI
        NA  +LS  AL+YVVG    +++
Subjt:  NANLSLSLPALSYVVGCVIGEEI

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X3

2.9e-20

48.78

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Query:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI
        + ST   SS +++ SL SPI LL+NI NLI++RLDS+N+VLW FQ++++LK +KL+GF+DG+ P P +T      S    + NP+YE W  KDQAL+T+I
Subjt:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI

Query:  NANLSLSLPALSYVVGCVIGEEI
        NA  +LS  AL+YVVG    +++
Subjt:  NANLSLSLPALSYVVGCVIGEEI

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X1

2.9e-20

48.78

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Query:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI
        + ST   SS +++ SL SPI LL+NI NLI++RLDS+N+VLW FQ++++LK +KL+GF+DG+ P P +T      S    + NP+YE W  KDQAL+T+I
Subjt:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI

Query:  NANLSLSLPALSYVVGCVIGEEI
        NA  +LS  AL+YVVG    +++
Subjt:  NANLSLSLPALSYVVGCVIGEEI

A0A5D3CLI6 T4.5

2.9e-20

48.78

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Query:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI
        + ST   SS +++ SL SPI LL+NI NLI++RLDS+N+VLW FQ++++LK +KL+GF+DG+ P P +T      S    + NP+YE W  KDQAL+T+I
Subjt:  TESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDIS----KPNPAYEAWFEKDQALITLI

Query:  NANLSLSLPALSYVVGCVIGEEI
        NA  +LS  AL+YVVG    +++
Subjt:  NANLSLSLPALSYVVGCVIGEEI

A0A6J1E049 uncharacterized protein LOC111025150

3.8e-20

50.43

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Query:  SPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTL-KVDDISK-----PNPAYEAWFEKDQALITLINANLSL
        S    + L SPI LL+NI NL+++RLDSSN+VLW FQ++++LK +KL+GF+DGS P PA+ L    D S       NPA+  W  KD AL+TL+NA LS 
Subjt:  SPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTL-KVDDISK-----PNPAYEAWFEKDQALITLINANLSL

Query:  SLPALSYVVGCVIGEEI
        S  AL+YVVGC   +++
Subjt:  SLPALSYVVGCVIGEEI

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

8.4e-09

34.34

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Query:  SQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLSLSL-PALS
        ++E  L +  +L  N+SN+   +L S+NY++W  Q+ +L   Y+L GFLDGS   P  T+  D   + NP Y  W  +D+ + + +   +S+S+ PA+S
Subjt:  SQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLSLSL-PALS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.4e-10

36.36

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Query:  SQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLSLSL-PALS
        ++E  L +  +L  N+SN+   +L S+NY++W  Q+ +L   Y+L GFLDGS P P  T+  D + + NP Y  W  +D+ + + I   +S+S+ PA+S
Subjt:  SQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLSLSL-PALS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTTCCACCGAGAGTACTGTTGCAAATTCATCTCCTTCTCAAGAACAATCCCTCTATTCTCCGATTGTTCTGTTGACGAACATAAGCAATTTGATCACCGTTCGTCT
GGATTCGTCCAATTACGTTCTTTGGCATTTTCAAATTTCTTCTCTACTCAAGACGTACAAACTTTTCGGATTTCTGGATGGATCAATTCCTGCTCCAGCCAAAACACTGA
AGGTTGATGATATTTCAAAACCTAATCCGGCCTATGAAGCTTGGTTTGAGAAGGATCAAGCTCTTATCACTCTGATAAATGCAAACCTTAGCTTATCACTTCCTGCACTT
TCATATGTCGTCGGCTGTGTCATAGGGGAAGAGATTGAACCACCGAACTTCAGAATGGTAATTGGTACCTTATCATTGAGTCGTGTTCGAATTGACTTTTCGATTCTGAA
GTTTATGGAAGGTCGCAGGGGAATGTCGGAGGCCTTAGGCCGAAGCCGAATTCCGAATCTTGGGCCTGGGGCGTTACAAAACCCTTCTTCATTGATAAAGAAGGGATCCC
AAAACTATTCTCCAGACTCTCTTCTCTTGCTCTGGCTCTTTTATTTGTTTCCCATCTATCTCCTTGCTAACTTAAGCATCAAAGGTGGTGTGGCAAGCACCATCAAAGGT
GGTGTGGCAAACACCACACCGGTGTGCAGTCTTTACTGGTTTGCAGGTCACGTCTTCCCCAGTCTCTACAAAATCACTGTTGGTGTCACGTGA

mRNA sequence

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Protein sequence

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MSSTESTVANSSPSQEQSLYSPIVLLTNISNLITVRLDSSNYVLWHFQISSLLKTYKLFGFLDGSIPAPAKTLKVDDISKPNPAYEAWFEKDQALITLINANLSLSLPAL
SYVVGCVIGEEIEPPNFRMVIGTLSLSRVRIDFSILKFMEGRRGMSEALGRSRIPNLGPGALQNPSSLIKKGSQNYSPDSLLLLWLFYLFPIYLLANLSIKGGVASTIKG
GVANTTPVCSLYWFAGHVFPSLYKITVGVT

Lag0033150 (gene) of Sponge gourd (AG-4) v1 genome