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Lag0033187 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033187
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationchr11:41555697..41557184
RNA-Seq ExpressionLag0033187
SyntenyLag0033187
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]4.7e-3583.67Show/hide
Query:  EVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
        EVPC +KPVS GDQSTA NG+ VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE L+K I  IDSSPDPETE+DKAMEDE FRIFSSKISS+I S
Subjt:  EVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]2.7e-3585.71Show/hide
Query:  EVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
        EVPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE LRK I  IDSS DPETELDKAMEDE FRIFSSKISS+I S
Subjt:  EVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
XP_008464781.1 PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo]6.1e-3581.55Show/hide
Query:  FATCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSL
        +A   +VPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE LRK I  IDSS DPETELDKAMEDE FRIFSSKISS+
Subjt:  FATCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSL

Query:  IGS
        I S
Subjt:  IGS
XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]1.7e-3788.66Show/hide
Query:  EVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
        EVPCVKPVSAGDQSTAPNGSLVDRPICV DQ+EVLEKSQLEAIASSSEI N LNDESL+KLI  I SSPDPETELD+AMEDE FRIFSSKISS+IGS
Subjt:  EVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
XP_031743374.1 uncharacterized protein LOC101208978 isoform X3 [Cucumis sativus]3.6e-3582.83Show/hide
Query:  AEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
        +EVPC +KPVS GDQSTA NG+ VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE L+K I  IDSSPDPETE+DKAMEDE FRIFSSKISS+I S
Subjt:  AEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein2.3e-3583.67Show/hide
Query:  EVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
        EVPC +KPVS GDQSTA NG+ VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE L+K I  IDSSPDPETE+DKAMEDE FRIFSSKISS+I S
Subjt:  EVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X11.3e-3585.71Show/hide
Query:  EVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
        EVPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE LRK I  IDSS DPETELDKAMEDE FRIFSSKISS+I S
Subjt:  EVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
A0A1S3CNV6 uncharacterized protein LOC103502587 isoform X23.0e-3581.55Show/hide
Query:  FATCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSL
        +A   +VPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE LRK I  IDSS DPETELDKAMEDE FRIFSSKISS+
Subjt:  FATCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSL

Query:  IGS
        I S
Subjt:  IGS
A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X18.3e-3888.66Show/hide
Query:  EVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
        EVPCVKPVSAGDQSTAPNGSLVDRPICV DQ+EVLEKSQLEAIASSSEI N LNDESL+KLI  I SSPDPETELD+AMEDE FRIFSSKISS+IGS
Subjt:  EVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
A0A6J1JZX2 zinc finger HIT domain-containing protein 32.5e-3483.51Show/hide
Query:  EVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
        EVPCVKPVSA DQS APNGS VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDE LR LI  IDSSPDPE ELDKAMEDE FRI SSKISS+IGS
Subjt:  EVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein1.2e-1550.48Show/hide
Query:  EVPCVKPVSAGD--QSTAPNGSL--------VDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSK
        EVP  +P  A D  + T    S         V RPI V ++  +LEK+Q EAIASSSEI  AL DE L+KLIY IDSS +P  ELD+AM  E FR F+ K
Subjt:  EVPCVKPVSAGD--QSTAPNGSL--------VDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSK

Query:  ISSLI
        I S I
Subjt:  ISSLI
AT4G28820.2 HIT-type Zinc finger family protein1.2e-1550.48Show/hide
Query:  EVPCVKPVSAGD--QSTAPNGSL--------VDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSK
        EVP  +P  A D  + T    S         V RPI V ++  +LEK+Q EAIASSSEI  AL DE L+KLIY IDSS +P  ELD+AM  E FR F+ K
Subjt:  EVPCVKPVSAGD--QSTAPNGSL--------VDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSK

Query:  ISSLI
        I S I
Subjt:  ISSLI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTGCAACCTGTGCAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTTGGAGA
CCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCGTCAGAAATACACAATGCTTTGAATGATGAAAGCCTCCGGAAGCTCATCTATGTCATCGATA
GTTCGCCAGATCCAGAAACTGAACTTGATAAAGCTATGGAAGATGAAACGTTTCGCATTTTCAGCAGCAAGATATCGTCCCTCATCGGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATTTGCAACCTGTGCAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTTGGAGA
CCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCGTCAGAAATACACAATGCTTTGAATGATGAAAGCCTCCGGAAGCTCATCTATGTCATCGATA
GTTCGCCAGATCCAGAAACTGAACTTGATAAAGCTATGGAAGATGAAACGTTTCGCATTTTCAGCAGCAAGATATCGTCCCTCATCGGCTCCTAG
Protein sequenceShow/hide protein sequence
MSFATCAEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDETFRIFSSKISSLIGS