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Lag0033189 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033189
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationchr11:41564700..41567669
RNA-Seq ExpressionLag0033189
SyntenyLag0033189
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045392.1 uncharacterized protein E6C27_scaffold422G00030 [Cucumis melo var. makuwa]3.6e-2767.92Show/hide
Query:  TAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRL
        ++F IKKF ILW+LGNVRSAMKHHPNTNAPYALHL   +VPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQL AI  +         +KL + 
Subjt:  TAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRL

Query:  LLSIYS
        +L+I S
Subjt:  LLSIYS

TYK11348.1 uncharacterized protein E5676_scaffold807G00230 [Cucumis melo var. makuwa]3.2e-2060.38Show/hide
Query:  TAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRL
        ++F IKKF ILW+LGNVRSAMKHHPNTNAPYALHL   +VPC +KPVS  DQS        +RPICVGDQNEVLEKSQL AI  +         +KL + 
Subjt:  TAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRL

Query:  LLSIYS
        +L+I S
Subjt:  LLSIYS

XP_008464781.1 PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo]5.2e-1866.28Show/hide
Query:  MKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS
        MKHHPNTNAPYALHL   +VPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQL AI  +         +KL + +L+I S
Subjt:  MKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS

XP_031743375.1 uncharacterized protein LOC101208978 isoform X4 [Cucumis sativus]3.3e-1760Show/hide
Query:  MKHHPNTNAPYALHLT---------CAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS
        MKHHPNTNAPYALHL+          +EVPC +KPVS GDQSTA NG+ VDRPICVGDQNEVLEKSQL AI  +         +KL + +L+I S
Subjt:  MKHHPNTNAPYALHLT---------CAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS

XP_031743376.1 uncharacterized protein LOC101208978 isoform X6 [Cucumis sativus]2.0e-1765.12Show/hide
Query:  MKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS
        MKHHPNTNAPYALHL   +VPC +KPVS GDQSTA NG+ VDRPICVGDQNEVLEKSQL AI  +         +KL + +L+I S
Subjt:  MKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS

TrEMBL top hitse value%identityAlignment
A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X13.3e-1058.54Show/hide
Query:  APYALHLTC----AEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS
        APY   L C     EVPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQL AI  +         +KL + +L+I S
Subjt:  APYALHLTC----AEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS

A0A1S3CNV6 uncharacterized protein LOC103502587 isoform X22.5e-1866.28Show/hide
Query:  MKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS
        MKHHPNTNAPYALHL   +VPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQL AI  +         +KL + +L+I S
Subjt:  MKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRLLLSIYS

A0A5A7TPU7 Uncharacterized protein1.7e-2767.92Show/hide
Query:  TAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRL
        ++F IKKF ILW+LGNVRSAMKHHPNTNAPYALHL   +VPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLEKSQL AI  +         +KL + 
Subjt:  TAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRL

Query:  LLSIYS
        +L+I S
Subjt:  LLSIYS

A0A5D3CJI3 Uncharacterized protein1.6e-2060.38Show/hide
Query:  TAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRL
        ++F IKKF ILW+LGNVRSAMKHHPNTNAPYALHL   +VPC +KPVS  DQS        +RPICVGDQNEVLEKSQL AI  +         +KL + 
Subjt:  TAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTG------MPDKLFRL

Query:  LLSIYS
        +L+I S
Subjt:  LLSIYS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X12.0e-1278.95Show/hide
Query:  APYALHLTC----AEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAI
        APY   L C     EVPCVKPVSAGDQSTAPNGSLVDRPICV DQ+EVLEKSQL AI
Subjt:  APYALHLTC----AEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGCCAAATAAAGCTTACAGCATTTGAGATTAAGAAATTCAACATTCTATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCC
CTATGCCTTGCACCTCACCTGTGCAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTTG
GGGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGTGGCTATTGTTGTTACGGGCATGCCAGATAAATTGTTTCGTTTGCTTTTAAGTATTTATTCTCTCTGTCGGTTA
GATATCGTCCATCATCGACTCCTAGCCCCAATGGTCACAGATGGAGTAGAGAAAACTCGTTCCATGTCTTATCAGTGGGACATTCTCAACCCTTATCATGAGTTCTCAGC
TCAGCAGATGCAGATTTCAACAATGGACGACGTTTCTCCGATTGAAGTAATGCTGGGGGAGGCCATCGAAGCGCTCAGCTGCGATGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAGCCAAATAAAGCTTACAGCATTTGAGATTAAGAAATTCAACATTCTATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCC
CTATGCCTTGCACCTCACCTGTGCAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTTG
GGGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGTGGCTATTGTTGTTACGGGCATGCCAGATAAATTGTTTCGTTTGCTTTTAAGTATTTATTCTCTCTGTCGGTTA
GATATCGTCCATCATCGACTCCTAGCCCCAATGGTCACAGATGGAGTAGAGAAAACTCGTTCCATGTCTTATCAGTGGGACATTCTCAACCCTTATCATGAGTTCTCAGC
TCAGCAGATGCAGATTTCAACAATGGACGACGTTTCTCCGATTGAAGTAATGCTGGGGGAGGCCATCGAAGCGCTCAGCTGCGATGTCTAA
Protein sequenceShow/hide protein sequence
MMSQIKLTAFEIKKFNILWVLGNVRSAMKHHPNTNAPYALHLTCAEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEKSQLVAIVVTGMPDKLFRLLLSIYSLCRL
DIVHHRLLAPMVTDGVEKTRSMSYQWDILNPYHEFSAQQMQISTMDDVSPIEVMLGEAIEALSCDV