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Lag0033239 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033239
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionNucleolar protein 10
Genome locationchr11:41993542..41999070
RNA-Seq ExpressionLag0033239
SyntenyLag0033239
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0042254 - ribosome biogenesis (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0030515 - snoRNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606368.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.7e-2249.65Show/hide
Query:  RVLRLV---ECFAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPL
        RV RL+   EC A MYLQFYINDNGDKVYTTK                                                               KESPL
Subjt:  RVLRLV---ECFAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPL

Query:  GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PPPKY
Subjt:  GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

KAG7011275.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1948.09Show/hide
Query:  VECFAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAH
        VEC A MYL +YINDNGDKVYTTK                                                               KESPLGLV QSAH
Subjt:  VECFAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAH

Query:  PARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        PARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
Subjt:  PARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

KCW88531.1 hypothetical protein EUGRSUZ_A00909, partial [Eucalyptus grandis]2.1e-1949.61Show/hide
Query:  AAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARF
        AAMYLQFYINDNGDKVYTTK                                                               KESPLGL TQSAHPARF
Subjt:  AAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARF

Query:  SPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        SPDDKYSRQRVLLKKRFGLLPTQQPP KY
Subjt:  SPDDKYSRQRVLLKKRFGLLPTQQPPPKY

QHN85708.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Arachis hypogaea]7.9e-2253.91Show/hide
Query:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISL-KESPLGLVTQSAHPARFS
        MYLQFYINDNGDKVYTTK            LS     + S +F   YH                              +S+ KE+PLGL TQSAHPARFS
Subjt:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISL-KESPLGLVTQSAHPARFS

Query:  PDDKYSRQRVLLKKRFGLLPTQQPPPKY
        PDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  PDDKYSRQRVLLKKRFGLLPTQQPPPKY

RWR83981.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cinnamomum micranthum f. kanehirae]7.4e-2048.46Show/hide
Query:  FAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPAR
        FAAMYLQ+YIN+NGDKVYTTK                                                               KESPLG+ TQSAHPAR
Subjt:  FAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPAR

Query:  FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

TrEMBL top hitse value%identityAlignment
A0A059DDR4 Nucleolar protein 10 (Fragment)1.0e-1949.61Show/hide
Query:  AAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARF
        AAMYLQFYINDNGDKVYTTK                                                               KESPLGL TQSAHPARF
Subjt:  AAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARF

Query:  SPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        SPDDKYSRQRVLLKKRFGLLPTQQPP KY
Subjt:  SPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A1S3BHD2 Nucleolar protein 101.0e-1949.61Show/hide
Query:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP
        MYLQFYINDNGDKVYTTK                                                               KESPLGL TQSAHPARFSP
Subjt:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP

Query:  DDKYSRQRVLLKKRFGLLPTQQPPPKY
        DDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  DDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A2P2IS35 Nucleolar protein 101.0e-1949.61Show/hide
Query:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP
        MYLQFYINDNGDKVYTTK                                                               KESPLGL TQSAHPARFSP
Subjt:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP

Query:  DDKYSRQRVLLKKRFGLLPTQQPPPKY
        DDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  DDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A443NZR2 Nucleolar protein 103.6e-2048.46Show/hide
Query:  FAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPAR
        FAAMYLQ+YIN+NGDKVYTTK                                                               KESPLG+ TQSAHPAR
Subjt:  FAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPAR

Query:  FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A6J1KA21 Nucleolar protein 101.4e-1949.61Show/hide
Query:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP
        MYLQFYINDNGDKVYTTK                                                               KESPLGLVTQSAHPARFSP
Subjt:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP

Query:  DDKYSRQRVLLKKRFGLLPTQQPPPKY
        DDKYSRQRVLLKKRFGLLPTQ PPPKY
Subjt:  DDKYSRQRVLLKKRFGLLPTQQPPPKY

SwissProt top hitse value%identityAlignment
Q54J26 H/ACA ribonucleoprotein complex subunit 31.1e-1071.74Show/hide
Query:  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESP    T SAHPARFS DDKYSR+R+ LKKRFGLL TQQPP ++
Subjt:  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Q6BQP3 H/ACA ribonucleoprotein complex subunit NOP101.1e-1088.57Show/hide
Query:  GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
        G +T+SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Subjt:  GLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ

Q6DRH5 H/ACA ribonucleoprotein complex subunit 31.1e-1035.2Show/hide
Query:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP
        M+LQFY+N+NG++VYT K V                                                                P G  T SAHPARFSP
Subjt:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP

Query:  DDKYSRQRVLLKKRFGLLPTQQPPP
        DDK+SR RV +KKRFGLL TQQP P
Subjt:  DDKYSRQRVLLKKRFGLLPTQQPPP

Q6Q547 H/ACA ribonucleoprotein complex subunit NOP109.4e-1075Show/hide
Query:  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
        K +  G +T+SAHPARFSPDDKYSRQRV LKKRFGL+P Q
Subjt:  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein6.7e-1641.73Show/hide
Query:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP
        MYLQ YIN+ G+KVYTTK                                                               KESPLGL T+SAHPARFSP
Subjt:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP

Query:  DDKYSRQRVLLKKRFGLLPTQQPPPKY
        DDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  DDKYSRQRVLLKKRFGLLPTQQPPPKY

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein4.8e-1741.73Show/hide
Query:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP
        MYLQ YIN+ G+KVYTTK                                                               KESPLGL T+SAHPARFSP
Subjt:  MYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRWLGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSP

Query:  DDKYSRQRVLLKKRFGLLPTQQPPPKY
        DDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  DDKYSRQRVLLKKRFGLLPTQQPPPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein1.4e-1684.78Show/hide
Query:  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACAGACGTGGCTTCGAAGATTGGTGCTTCGGAGGTCAACTCTACTGTCAAAGCCGCTGCTCGATTCCCTGAATCCCGCCATTTTCCGTTCCTCCATTGTCTCGA
CAAGCTTTCAGGCGTCAGGGTTCTTCGTCTGGTTGAGTGTTTTGCAGCGATGTATCTTCAATTTTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGAATGTCT
CGTCTTTCCACAAAGTTTGCGGTGAGGCTTTGAGCTTTGTTCCAAGAACTTCCAATTCTCCCATCTTTACTTCACCATATCATGATGGTAGATTAGAAATACCTCGGTGG
CTTGGTCCCTTCCTCGACCATGGGGGAGAAGTTTTAGAATTTAGATGCCATAATTTCTCCACTATTTCATTGAAAGAATCACCTCTAGGTTTGGTCACACAATCCGCTCA
TCCAGCCCGTTTCTCTCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTCAAGAAGCGATTTGGCTTGCTACCGACGCAGCAGCCACCTCCAAAGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACACAGACGTGGCTTCGAAGATTGGTGCTTCGGAGGTCAACTCTACTGTCAAAGCCGCTGCTCGATTCCCTGAATCCCGCCATTTTCCGTTCCTCCATTGTCTCGA
CAAGCTTTCAGGCGTCAGGGTTCTTCGTCTGGTTGAGTGTTTTGCAGCGATGTATCTTCAATTTTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGAATGTCT
CGTCTTTCCACAAAGTTTGCGGTGAGGCTTTGAGCTTTGTTCCAAGAACTTCCAATTCTCCCATCTTTACTTCACCATATCATGATGGTAGATTAGAAATACCTCGGTGG
CTTGGTCCCTTCCTCGACCATGGGGGAGAAGTTTTAGAATTTAGATGCCATAATTTCTCCACTATTTCATTGAAAGAATCACCTCTAGGTTTGGTCACACAATCCGCTCA
TCCAGCCCGTTTCTCTCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTCAAGAAGCGATTTGGCTTGCTACCGACGCAGCAGCCACCTCCAAAGTACTGA
Protein sequenceShow/hide protein sequence
MNTDVASKIGASEVNSTVKAAARFPESRHFPFLHCLDKLSGVRVLRLVECFAAMYLQFYINDNGDKVYTTKNVSSFHKVCGEALSFVPRTSNSPIFTSPYHDGRLEIPRW
LGPFLDHGGEVLEFRCHNFSTISLKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY