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Lag0033312 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033312
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:42686865..42687969
RNA-Seq ExpressionLag0033312
SyntenyLag0033312
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039966.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-1437.5Show/hide
Query:  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALN
        +W+LL D  N  + L +++  LC        K++++++  N +A  + +W +W ERN+RIF G E+++  IW+DI A+A LW + S  F+NY  S IALN
Subjt:  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALN

Query:  WKSF
          +F
Subjt:  WKSF

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-1137.38Show/hide
Query:  ASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHI
        A S+W L+    N +       D LC    +   K++++++  N +A  + +W +W ERN+RIF G E+++  IW+DI A+A LW + S  FSNY  S I
Subjt:  ASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHI

Query:  ALNWKSF
        ALN  +F
Subjt:  ALNWKSF

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-1138.39Show/hide
Query:  FASSVW----SLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNY
        FA S+W    S L    N   P       LC    + N K++++++  N +A  + +W +W ERN+RIF G E++   IW+DI A+A LW + S  FSNY
Subjt:  FASSVW----SLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNY

Query:  CGSHIALNWKSF
          S IALN  +F
Subjt:  CGSHIALNWKSF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-1035.51Show/hide
Query:  ASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHI
        A S+W  +    N +       + LC    +   K++++++  N +A  + +W +W ERN+RIF G E+++  IW+DI A+A LW + S  FSNY  S I
Subjt:  ASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHI

Query:  ALNWKSF
        ALN  +F
Subjt:  ALNWKSF

TYK24536.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-1437.5Show/hide
Query:  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALN
        +W+LL D  N  + L +++  LC        K++++++  N +A  + +W +W ERN+RIF G E+++  IW+DI A+A LW + S  F+NY  S IALN
Subjt:  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALN

Query:  WKSF
          +F
Subjt:  WKSF

TrEMBL top hitse value%identityAlignment
A0A5A7TCY9 LINE-1 retrotransposable element ORF2 protein1.8e-1437.5Show/hide
Query:  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALN
        +W+LL D  N  + L +++  LC        K++++++  N +A  + +W +W ERN+RIF G E+++  IW+DI A+A LW + S  F+NY  S IALN
Subjt:  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALN

Query:  WKSF
          +F
Subjt:  WKSF

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein1.1e-1137.38Show/hide
Query:  ASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHI
        A S+W L+    N +       D LC    +   K++++++  N +A  + +W +W ERN+RIF G E+++  IW+DI A+A LW + S  FSNY  S I
Subjt:  ASSVWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHI

Query:  ALNWKSF
        ALN  +F
Subjt:  ALNWKSF

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein5.0e-1238.39Show/hide
Query:  FASSVW----SLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNY
        FA S+W    S L    N   P       LC    + N K++++++  N +A  + +W +W ERN+RIF G E++   IW+DI A+A LW + S  FSNY
Subjt:  FASSVW----SLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNY

Query:  CGSHIALNWKSF
          S IALN  +F
Subjt:  CGSHIALNWKSF

A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein1.8e-1437.5Show/hide
Query:  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALN
        +W+LL D  N  + L +++  LC        K++++++  N +A  + +W +W ERN+RIF G E+++  IW+DI A+A LW + S  F+NY  S IALN
Subjt:  VWSLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALN

Query:  WKSF
          +F
Subjt:  WKSF

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein9.4e-1136.94Show/hide
Query:  ASSVW----SLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYC
        A S+W    S L    N   P       LC    +   K++++++  N +A  + +W +W ERN+RIF G E+++  IW+DI A+A LW + S  FSNY 
Subjt:  ASSVW----SLLMDGTNLHDPLHQKVDLLCEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYC

Query:  GSHIALNWKSF
         S IALN  +F
Subjt:  GSHIALNWKSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTTAAGCCTCATTTCATATATGAACAGCTTGATACAGAGATGTATTTATACACATCTGAGAGACTAAGAATTGGGACCCCTTCCCTCGCAGGCCCTTACTGGAT
AGAGAACAGCAAGCATGGTCCGATTTCTCTCATCGCCTCCAAAAGCCCGCCCACAATGGTGGATAAAGCTGATTCCCTAATAAGGTGGTTATTAGACCTAGACGGAAGTT
TTTGTGTCTCCACTACTCGTGCAGCCTTAAGCTTTGCTAGCTCTGTTTGGTCTCTCTTGATGGATGGCACCAACCTTCACGACCCTCTTCATCAGAAAGTTGATCTTCTA
TGTGAAGAAGCCTTTGCTGTTAACTCCAAATCTCAAAGGAGCATTTTGTGCATTAATATCTTTGCTGCTCCTGCTATTATATGGGTTCTTTGGTCTGAGCGTAATTCTCG
TATTTTCCGGGGCAATGAGCGATCTCTCCTATCCATATGGGATGACATTCTGGCTATGGCGGCCTTATGGGCGACCACTTCTAAAGCATTCTCTAACTATTGTGGTTCCC
ATATCGCCTTGAATTGGAAATCTTTCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTTAAGCCTCATTTCATATATGAACAGCTTGATACAGAGATGTATTTATACACATCTGAGAGACTAAGAATTGGGACCCCTTCCCTCGCAGGCCCTTACTGGAT
AGAGAACAGCAAGCATGGTCCGATTTCTCTCATCGCCTCCAAAAGCCCGCCCACAATGGTGGATAAAGCTGATTCCCTAATAAGGTGGTTATTAGACCTAGACGGAAGTT
TTTGTGTCTCCACTACTCGTGCAGCCTTAAGCTTTGCTAGCTCTGTTTGGTCTCTCTTGATGGATGGCACCAACCTTCACGACCCTCTTCATCAGAAAGTTGATCTTCTA
TGTGAAGAAGCCTTTGCTGTTAACTCCAAATCTCAAAGGAGCATTTTGTGCATTAATATCTTTGCTGCTCCTGCTATTATATGGGTTCTTTGGTCTGAGCGTAATTCTCG
TATTTTCCGGGGCAATGAGCGATCTCTCCTATCCATATGGGATGACATTCTGGCTATGGCGGCCTTATGGGCGACCACTTCTAAAGCATTCTCTAACTATTGTGGTTCCC
ATATCGCCTTGAATTGGAAATCTTTCATGTAA
Protein sequenceShow/hide protein sequence
MSFKPHFIYEQLDTEMYLYTSERLRIGTPSLAGPYWIENSKHGPISLIASKSPPTMVDKADSLIRWLLDLDGSFCVSTTRAALSFASSVWSLLMDGTNLHDPLHQKVDLL
CEEAFAVNSKSQRSILCINIFAAPAIIWVLWSERNSRIFRGNERSLLSIWDDILAMAALWATTSKAFSNYCGSHIALNWKSFM