CuGenDBv2

Gene ID	Lag0033334
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribosome-recycling factor, chloroplastic
Genome location	chr11:42828304..42830892
RNA-Seq Expression	Lag0033334
Synteny	Lag0033334
Gene Ontology terms	GO:0009658 - chloroplast organization (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0032544 - plastid translation (biological process) GO:0050832 - defense response to fungus (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR002661 - Ribosome recycling factor IPR023584 - Ribosome recycling factor domain IPR036191 - RRF superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008449432.1 PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo]

2.7e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

XP_008449433.1 PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo]

2.7e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

XP_022159166.1 ribosome-recycling factor, chloroplastic isoform X1 [Momordica charantia]

2.7e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGRANP+MLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

XP_038888223.1 ribosome-recycling factor, chloroplastic isoform X1 [Benincasa hispida]

2.7e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

XP_038888224.1 ribosome-recycling factor, chloroplastic isoform X2 [Benincasa hispida]

2.7e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJG4 Ribosome-recycling factor, chloroplastic

2.2e-61

84.18

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG+TPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

A0A1S3BMN4 Ribosome-recycling factor, chloroplastic

1.3e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

A0A1S3BMY6 Ribosome-recycling factor, chloroplastic

1.3e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

A0A5A7URP7 Ribosome-recycling factor, chloroplastic

1.3e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

A0A6J1DZ32 Ribosome-recycling factor, chloroplastic

1.3e-61

84.81

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTIDTVRS+FNSIRTGRANP+MLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

SwissProt top hits

e value

%identity

Alignment

A2YMU2 Ribosome-recycling factor, chloroplastic

1.1e-52

68.35

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEK I+TV+++FN++RTGRANPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK IEK IV ++LG+TP+NDGEVIR+T+P LTS+RRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          ++   +  E           VA+RNIRRDA+KAY+KLEKEKKLSEDNVKDLS+DLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

A3BLC3 Ribosome-recycling factor, chloroplastic

1.1e-52

68.35

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEK I+TV+++FN++RTGRANPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK IEK IV ++LG+TP+NDGEVIR+T+P LTS+RRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          ++   +  E           VA+RNIRRDA+KAY+KLEKEKKLSEDNVKDLS+DLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

P37706 Ribosome-recycling factor, chloroplastic (Fragment)

1.8e-55

72.15

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTI+ V++SFNSIRT R+NP MLDKI+VEYYG+P SLKSIAQISTPD+SSLLV PYDKSSLK IEKAIVNSDLG+TPNNDG+VIRL++PQLT++RRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S I+ ++       +   VA+RNIRRDA+K+Y+KLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

P82231 Ribosome-recycling factor, chloroplastic

3.9e-55

73.42

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTI+T+RS+FNS+RT RA+P MLD+IEVEYYG+PVSLKSIAQISTPDASSLL+ PYDKSSLK+IEKAIV S LG++PNNDGEVIRL+LP LTS+RRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
                + +V+   A +   VAVRNIRRDALK+YEKLEKEKKLSEDNVKDLS+DLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

Q9M1X0 Ribosome-recycling factor, chloroplastic

8.4e-58

75.95

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTI+T+R+SFNSIRTGR+N AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAIVNSDLG+TPNNDG+VIRL+LP LTS+RRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VA+RNIRRDALK+Y+KLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G01800.1 Ribosome recycling factor

8.7e-18

35.44

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        ME  ID +      +RTGRA P MLD I VE  G  + L  +A +S  D  +L V PYD  ++K +EKAIV S LGL P  DG+ +  ++P LT E    
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKE-KKLSEDNVKDLSSDL
                  + +C    ++  V  ++IRR   KA + ++K    L +D VK L  ++
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKE-KKLSEDNVKDLSSDL

AT3G63190.1 ribosome recycling factor, chloroplast precursor

6.0e-59

75.95

Show/hide

Query:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF
        MEKTI+T+R+SFNSIRTGR+N AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAIVNSDLG+TPNNDG+VIRL+LP LTS+RRK 
Subjt:  MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKF

Query:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ
          + S ++ ++       +   VA+RNIRRDALK+Y+KLEKEKKLSEDNVKDLSSDLQ
Subjt:  PFQSSDIIVREVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAAAGACTATAGATACTGTTCGGTCTAGTTTCAACTCAATAAGGACTGGCAGAGCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGT
TAGCCTGAAGAGCATTGCCCAAATTAGTACACCTGATGCAAGCTCTCTCTTGGTCCAACCATATGATAAATCCAGCTTGAAGTCCATAGAGAAGGCCATAGTCAACTCTG
ACTTGGGATTGACTCCCAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGAAGAAAGTTCCCCTTTCAGTCTTCTGATATTATTGTGAGA
GAAGTTCTCTGCGATTTTGCCTTGCAGAACATTGCTGTGGCAGTTAGGAATATAAGAAGAGATGCTCTAAAAGCTTATGAAAAACTAGAAAAGGAGAAAAAGCTTTCGGA
AGATAATGTTAAGGACTTGTCAAGTGATTTGCAGGTTCATTGTTGCTTCTGTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKFPFQSSDIIVR
EVLCDFALQNIAVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQVHCCFC

Lag0033334 (gene) of Sponge gourd (AG-4) v1 genome