CuGenDBv2

Gene ID	Lag0033531
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease
Genome location	chr3:43525..57128
RNA-Seq Expression	Lag0033531
Synteny	Lag0033531
Gene Ontology terms	GO:0006402 - mRNA catabolic process (biological process) GO:0006418 - tRNA aminoacylation for protein translation (biological process) GO:0031047 - gene silencing by RNA (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0016442 - RISC complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0004518 - nuclease activity (molecular function) GO:0004812 - aminoacyl-tRNA ligase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR001412 - Aminoacyl-tRNA synthetase, class I, conserved site IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold IPR016071 - Staphylococcal nuclease (SNase-like), OB-fold IPR035437 - SNase-like, OB-fold superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589331.1 Ribonuclease TUDOR 2, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-35

92.13

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSE SLNALMLQEGLARLEKRKKWESKERQ+AFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

XP_004138013.1 ribonuclease TUDOR 1 [Cucumis sativus]

2.0e-35

93.26

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLE YQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

XP_022987938.1 ribonuclease TUDOR 1-like [Cucurbita maxima]

2.0e-35

92.13

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSE SLNALMLQEGLARLEKRKKWESKERQ+AFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

XP_023516295.1 ribonuclease TUDOR 1-like [Cucurbita pepo subsp. pepo]

2.0e-35

92.13

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSE SLNALMLQEGLARLEKRKKWESKERQ+AFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

XP_038878676.1 ribonuclease TUDOR 1-like [Benincasa hispida]

5.2e-36

93.26

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEED GPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BH85 Ribonuclease

9.6e-36

93.26

Show/hide

Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLE YQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

A0A6J1E0N2 Ribonuclease

9.6e-36

92.13

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSE SLNALMLQEGLARLEKRKKWESKERQ+AFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

A0A6J1JGV6 Ribonuclease

9.6e-36

92.13

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSE SLNALMLQEGLARLEKRKKWESKERQ+AFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

A0A6J1JKT1 ribonuclease TUDOR 1-like

9.6e-36

92.13

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSE SLNALMLQEGLARLEKRKKWESKERQ+AFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

E5GBL0 Ribonuclease

9.6e-36

93.26

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR
        + +GTGNILIV+LVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLE YQEEARTDRRGMWQYGDIQSDEEDAGPVRK GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

SwissProt top hits

e value

%identity

Alignment

Q7MAE0 Tryptophan--tRNA ligase

1.2e-06

60.61

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Query:  VLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQD
        ++ +R+ SG+QPTG IHLGNY+GA+KNW+  QD
Subjt:  VLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQD

Q8RXE9 Tryptophan--tRNA ligase, chloroplastic/mitochondrial

3.1e-07

65.71

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Query:  SDVLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQD
        S  + +R+VSGVQPTG +HLGNY+GAIKNW++ QD
Subjt:  SDVLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQD

Q8VZG7 Ribonuclease TUDOR 1

9.9e-22

58.89

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK-TGGRR
        + +GTG   +V+L+AV  E+S+NA MLQEG+AR+EKR+KW  K +Q A  +LE +QEEAR  R G+WQYGDI+SD+ED GP RK  GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK-TGGRR

Q8YXE4 Tryptophan--tRNA ligase

1.5e-06

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Query:  QRIVSGVQPTGFIHLGNYIGAIKNWISPQD
        QR++SGVQPTG +HLGNY+GAI+NW+  QD
Subjt:  QRIVSGVQPTGFIHLGNYIGAIKNWISPQD

Q9FLT0 Ribonuclease TUDOR 2

5.8e-22

58.14

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTG
        + +GTG  L+V+L+AV  E+S+NA MLQEG+AR+EKR++WE K++Q A  +LE +Q+EAR  R G+W+YGDIQSD+ED  PVRK G
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTG

Arabidopsis top hits

e value

%identity

Alignment

AT2G25840.1 Nucleotidylyl transferase superfamily protein

2.2e-08

65.71

Show/hide

Query:  SDVLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQD
        S  + +R+VSGVQPTG +HLGNY+GAIKNW++ QD
Subjt:  SDVLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQD

AT2G25840.3 Nucleotidylyl transferase superfamily protein

2.2e-08

65.71

Show/hide

Query:  SDVLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQD
        S  + +R+VSGVQPTG +HLGNY+GAIKNW++ QD
Subjt:  SDVLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQD

AT5G07350.1 TUDOR-SN protein 1

7.0e-23

58.89

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK-TGGRR
        + +GTG   +V+L+AV  E+S+NA MLQEG+AR+EKR+KW  K +Q A  +LE +QEEAR  R G+WQYGDI+SD+ED GP RK  GGRR
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRK-TGGRR

AT5G07350.2 TUDOR-SN protein 1

2.0e-22

57.47

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Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGG
        + +GTG   +V+L+AV  E+S+NA MLQEG+AR+EKR+KW  K +Q A  +LE +QEEAR  R G+WQYGDI+SD+ED GP RK  G
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGG

AT5G61780.1 TUDOR-SN protein 2

4.1e-23

58.14

Show/hide

Query:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTG
        + +GTG  L+V+L+AV  E+S+NA MLQEG+AR+EKR++WE K++Q A  +LE +Q+EAR  R G+W+YGDIQSD+ED  PVRK G
Subjt:  QNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQVAFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTG

Sequences

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CDS sequence

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ATGAGCATTTCGAGTGGTTTTATCGTTGACGGTGTTGCCGAGAGGAATTCTGACGTTTTGACGCAGAGGATAGTTTCTGGTGTTCAGCCAACAGGCTTTATTCACCTTGG
TAATTATATAGGTGCAATAAAGAATTGGATTTCACCTCAGGATTTTGTTGCATTTGCTGCTGGTATTGTTTGCAAAATTGCCTTAAATTTGAACAGGGAAAACTTGAGTT
TTCATGGTGGAGAAAAGAACTCACCACTTTGGATCAAGGACAATGAAATTTTGGATGAAAGCAAAACGACCAGCTTGAGTTTCATGGTTTATGTTTTAAAGACGAGTACA
ATAAAGCTTTGGATCAAGGGAAAACTTGAGTTTTCATGGTGGGAAAAGGAGATTGATAGTGCTCTGGTATATAGAGCCATCATTCTTCGAACATCGTGCCTTAGAGAATC
CCCTAAATCGGAAAAGGTGATCATTCTAAGCAGCTCAGTCACCACTCCAACCGTTGTGCCTAAATTCAGGGGAGGTTTAGGATTGCTTTATGAGTTCCATAGATCTGTTG
TCACCCCGATAGGTGTTGAGGCAATTCAGAACTTCTTTGAGGTGAGTTTCAAATTTCCCTTTGTGCCTAGTTTCTTCGAGGGGTTTTGCGTTGTGGATCTCCCTCTTGTT
AATGGGGCACGTCCACAGGAACATCTTCTCGTTGCCATAGCCTTGAAGGCTATGGGACTAACATATATTGCAAACACATTATATCCTGCAGCTAGAGGGATTGTTCGAGA
AGGAGAAGATTTGGTGTTTCTAATAACATTGTCATTTGCTAGTTGTGATGCTATGGGGTTGGAAAGATCGAGAAGTGCTCAAAATAAGGGAACGGGGAATATTCTTATTG
TGAGCCTTGTTGCTGTCGGGTCAGAGCTTAGTTTAAATGCGTTGATGCTTCAGGAAGGACTTGCTAGACTAGAGAAAAGGAAAAAGTGGGAATCTAAGGAAAGACAAGTC
GCCTTTGGAAGTTTAGAAGGATACCAAGAGGAAGCACGGACAGATCGACGAGGGATGTGGCAGTACGGAGACATTCAGTCTGATGAAGAGGACGCTGGTCCTGTGAGAAA
AACCGGTGGCCGACGTTGA

mRNA sequence

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Protein sequence

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MSISSGFIVDGVAERNSDVLTQRIVSGVQPTGFIHLGNYIGAIKNWISPQDFVAFAAGIVCKIALNLNRENLSFHGGEKNSPLWIKDNEILDESKTTSLSFMVYVLKTST
IKLWIKGKLEFSWWEKEIDSALVYRAIILRTSCLRESPKSEKVIILSSSVTTPTVVPKFRGGLGLLYEFHRSVVTPIGVEAIQNFFEVSFKFPFVPSFFEGFCVVDLPLV
NGARPQEHLLVAIALKAMGLTYIANTLYPAARGIVREGEDLVFLITLSFASCDAMGLERSRSAQNKGTGNILIVSLVAVGSELSLNALMLQEGLARLEKRKKWESKERQV
AFGSLEGYQEEARTDRRGMWQYGDIQSDEEDAGPVRKTGGRR

Lag0033531 (gene) of Sponge gourd (AG-4) v1 genome