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Lag0033538 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033538
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:148052..148612
RNA-Seq ExpressionLag0033538
SyntenyLag0033538
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]3.5e-1729.52Show/hide
Query:  IIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-----RGLSFDSPSVQIESDALHIVQLLQGNVED
        + +W +PPYG  K+NCD AW    Q GG+GW++RD +G+ + AG +  +R      +E  A+ E L      GLS     +++ESD+L +++++ G    
Subjt:  IIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-----RGLSFDSPSVQIESDALHIVQLLQGNVED

Query:  ETGV-KIFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI
        +  V  I  + K L+   +     +  R  N+ AH++A      G   +W  ++P W+  +  SD+
Subjt:  ETGV-KIFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI

CAB4274760.1 unnamed protein product [Prunus armeniaca]8.7e-1629.19Show/hide
Query:  IAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-RGLSFDSPSVQIESDALHIVQLLQGNVEDETGVK
        ++W +P  G  K+NCD AWS     GG+GW++RD  G  LCAG +  +       +E LA+   L    +F    + +ESD+   + +L G    ++ ++
Subjt:  IAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-RGLSFDSPSVQIESDALHIVQLLQGNVEDETGVK

Query:  -IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI
         I  + + L+            R+ NQ AH +A  A   G +  W H+ P W+ +   SD+
Subjt:  -IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI

CAB4279811.1 unnamed protein product [Prunus armeniaca]1.8e-1628.92Show/hide
Query:  IIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-----RGLSFDSPSVQIESDALHIVQLLQGNVED
        + +W + PYG  K+NCD AW    Q GG+GW++RD  G+ + AG +  +R      +E  A+ E L      GLS     +++ESD+L ++++L G    
Subjt:  IIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-----RGLSFDSPSVQIESDALHIVQLLQGNVED

Query:  ETGVK-IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI
        +  V+ I  + K L+   +     +  R  N+ AH++       G   +W  ++P W+ ++  SD+
Subjt:  ETGVK-IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.4e-1838.81Show/hide
Query:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFD-SPSVQIESDALHIVQLLQGNVEDETG-VKI
        W  P    WKLN + AW  D   GGIGWILRD  G  + A  R I     IT+LE +A+CEGLR +  +    + +ESD+L  + LL    +D+T  + +
Subjt:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFD-SPSVQIESDALHIVQLLQGNVEDETG-VKI

Query:  FIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA
          E   ++ D +I  + H+ R  N++AH LAR+A
Subjt:  FIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.4e-1838.03Show/hide
Query:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFD---------SPSVQIESDALHIVQLLQGNVE
        W  P    WKLN D AW  D   GGIGWILRD  G  + A  R I     IT+LE +A+CEGLR +  +            + +ESD+L  + LL    +
Subjt:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFD---------SPSVQIESDALHIVQLLQGNVE

Query:  DETG-VKIFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA
        D+T  + +  E   ++ D KI  + H+ R  N++AH LAR+A
Subjt:  DETG-VKIFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.0e-1938.81Show/hide
Query:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFD-SPSVQIESDALHIVQLLQGNVEDETG-VKI
        W  P    WKLN + AW  D   GGIGWILRD  G  + A  R I     IT+LE +A+CEGLR +  +    + +ESD+L  + LL    +D+T  + +
Subjt:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFD-SPSVQIESDALHIVQLLQGNVEDETG-VKI

Query:  FIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA
          E   ++ D +I  + H+ R  N++AH LAR+A
Subjt:  FIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA

A0A6J1DSV1 uncharacterized protein LOC1110236087.0e-1938.03Show/hide
Query:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFD---------SPSVQIESDALHIVQLLQGNVE
        W  P    WKLN D AW  D   GGIGWILRD  G  + A  R I     IT+LE +A+CEGLR +  +            + +ESD+L  + LL    +
Subjt:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFD---------SPSVQIESDALHIVQLLQGNVE

Query:  DETG-VKIFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA
        D+T  + +  E   ++ D KI  + H+ R  N++AH LAR+A
Subjt:  DETG-VKIFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.7e-1729.52Show/hide
Query:  IIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-----RGLSFDSPSVQIESDALHIVQLLQGNVED
        + +W +PPYG  K+NCD AW    Q GG+GW++RD +G+ + AG +  +R      +E  A+ E L      GLS     +++ESD+L +++++ G    
Subjt:  IIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-----RGLSFDSPSVQIESDALHIVQLLQGNVED

Query:  ETGV-KIFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI
        +  V  I  + K L+   +     +  R  N+ AH++A      G   +W  ++P W+  +  SD+
Subjt:  ETGV-KIFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI

A0A6J5UE59 Reverse transcriptase domain-containing protein4.2e-1629.19Show/hide
Query:  IAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-RGLSFDSPSVQIESDALHIVQLLQGNVEDETGVK
        ++W +P  G  K+NCD AWS     GG+GW++RD  G  LCAG +  +       +E LA+   L    +F    + +ESD+   + +L G    ++ ++
Subjt:  IAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-RGLSFDSPSVQIESDALHIVQLLQGNVEDETGVK

Query:  -IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI
         I  + + L+            R+ NQ AH +A  A   G +  W H+ P W+ +   SD+
Subjt:  -IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI

A0A6J5UV01 Reverse transcriptase domain-containing protein8.5e-1728.92Show/hide
Query:  IIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-----RGLSFDSPSVQIESDALHIVQLLQGNVED
        + +W + PYG  K+NCD AW    Q GG+GW++RD  G+ + AG +  +R      +E  A+ E L      GLS     +++ESD+L ++++L G    
Subjt:  IIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGL-----RGLSFDSPSVQIESDALHIVQLLQGNVED

Query:  ETGVK-IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI
        +  V+ I  + K L+   +     +  R  N+ AH++       G   +W  ++P W+ ++  SD+
Subjt:  ETGVK-IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.0e-1129.41Show/hide
Query:  IAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLS-FDSPSVQIESDALHIVQLLQGNVEDETGVK
        + W  PPY   K N D  W  +  R GIGWILR+ +G  L  G R + R   +   E  A+   +  +S F+   +  ESDA  +V LL  +    T   
Subjt:  IAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLS-FDSPSVQIESDALHIVQLLQGNVEDETGVK

Query:  IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA-CLSGSSDSWTHIFPSWV
           + + L+   +        R GN++A R+AR++   S        I P W+
Subjt:  IFIEAKSLIVDRKIDDIYHVKRTGNQMAHRLARKA-CLSGSSDSWTHIFPSWV

AT4G29090.1 Ribonuclease H-like superfamily protein7.6e-1029.14Show/hide
Query:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLS-FDSPSVQIESDALHIVQLLQGNVEDETGVKIF
        W  PP+   K N D  W+ D +R GIGW+LR+  G     G R + +   +   E  A+   +  LS F    V  ESD+  ++++L  N E    +K  
Subjt:  WTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLS-FDSPSVQIESDALHIVQLLQGNVEDETGVKIF

Query:  IEAKSLIVDRKID-DIYHVKRTGNQMAHRLARKACLSGSSDSWTH-IFPSW
        I+    ++ +  +     + R GN +A R+AR++    + D   + I PSW
Subjt:  IEAKSLIVDRKID-DIYHVKRTGNQMAHRLARKACLSGSSDSWTH-IFPSW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCCGGATCCTTCGAGAATAATAGCATGGACTCGACCGCCATATGGAAAATGGAAGTTAAATTGCGATGTCGCCTGGTCTGAAGACCTTCAACGAGGGGGGATCGG
TTGGATCCTTCGTGACCCGAATGGATATCCTCTGTGCGCGGGTTTTCGTCACATTGTACGACCTTGGAAAATTACATGGCTGGAGACGCTGGCTGTTTGCGAAGGACTTC
GTGGGTTGTCGTTTGATTCTCCTTCGGTTCAAATTGAAAGTGATGCTCTCCACATTGTGCAACTCTTACAGGGTAATGTTGAGGATGAGACTGGGGTGAAAATATTTATA
GAAGCTAAATCCCTAATTGTTGATAGGAAGATTGATGACATATATCATGTGAAGAGGACTGGCAACCAGATGGCTCATAGATTGGCGAGAAAGGCTTGTTTGAGTGGTAG
TTCAGATAGCTGGACCCATATTTTTCCATCTTGGGTTCTTCATTTAAATGAATCTGACATAGGTGGTTTTAATACCAATAGTGGGGGTCCTGTCCCACAACCAATGGTAT
TCCGTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCCGGATCCTTCGAGAATAATAGCATGGACTCGACCGCCATATGGAAAATGGAAGTTAAATTGCGATGTCGCCTGGTCTGAAGACCTTCAACGAGGGGGGATCGG
TTGGATCCTTCGTGACCCGAATGGATATCCTCTGTGCGCGGGTTTTCGTCACATTGTACGACCTTGGAAAATTACATGGCTGGAGACGCTGGCTGTTTGCGAAGGACTTC
GTGGGTTGTCGTTTGATTCTCCTTCGGTTCAAATTGAAAGTGATGCTCTCCACATTGTGCAACTCTTACAGGGTAATGTTGAGGATGAGACTGGGGTGAAAATATTTATA
GAAGCTAAATCCCTAATTGTTGATAGGAAGATTGATGACATATATCATGTGAAGAGGACTGGCAACCAGATGGCTCATAGATTGGCGAGAAAGGCTTGTTTGAGTGGTAG
TTCAGATAGCTGGACCCATATTTTTCCATCTTGGGTTCTTCATTTAAATGAATCTGACATAGGTGGTTTTAATACCAATAGTGGGGGTCCTGTCCCACAACCAATGGTAT
TCCGTTTTTAA
Protein sequenceShow/hide protein sequence
MVPDPSRIIAWTRPPYGKWKLNCDVAWSEDLQRGGIGWILRDPNGYPLCAGFRHIVRPWKITWLETLAVCEGLRGLSFDSPSVQIESDALHIVQLLQGNVEDETGVKIFI
EAKSLIVDRKIDDIYHVKRTGNQMAHRLARKACLSGSSDSWTHIFPSWVLHLNESDIGGFNTNSGGPVPQPMVFRF