; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0033600 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033600
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionmediator of RNA polymerase II transcription subunit 30
Genome locationchr3:493768..495358
RNA-Seq ExpressionLag0033600
SyntenyLag0033600
Gene Ontology termsGO:0016592 - mediator complex (cellular component)
InterPro domainsIPR034568 - Mediator of RNA polymerase II transcription subunit 30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]1.5e-8683.78Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK  NVLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TATS LTI SP+GPSSHSANGVVNGDASSESTSHHTD S GG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKAKAYE GTSGHASPADQSEIDKLEQHLSNLRK                        ELVVKNLHIK
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLRDLVADVSTWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]3.3e-8683.78Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK   VLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TATS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKAKAYE GTS HASPADQSEIDKLEQHLSNLRK                        ELVVKNLHIK
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLRDLVADVSTWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]3.0e-7977.48Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        ME+KP ++LAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS   TATSAL+I SPNGPS HS NGVVNGDASSEST+HH D SSGG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        G+GSGGALEEAR RY NSVLALRAILAAIP+SQ AKAYE GTSGHASPADQSEIDKLEQHL NLRK                        ELV KNLH+K
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLRDLVAD+STWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]1.4e-8481.53Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEKP NVL+L QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA T TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKAKA+E GTSGHASPADQSEIDKLEQHLSNLRK                        EL+VKNLHIK
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLR+LVADVSTWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]2.0e-8382.06Show/hide
Query:  MMEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSG
        MMEEKP NVLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST  TATS L I SPNGPSSHS NGVVNGDASSESTSHHTD SSG
Subjt:  MMEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSG

Query:  GGSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHI
        GGSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA AYE GTSG  SPADQSEIDKLEQHLS+LRK                        ELVVKNLHI
Subjt:  GGSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHI

Query:  KLLIDQLRDLVADVSTWQSPCSV
        KLLIDQLRDLVADVSTWQSPCSV
Subjt:  KLLIDQLRDLVADVSTWQSPCSV

TrEMBL top hitse value%identityAlignment
A0A0A0LNW4 Uncharacterized protein7.2e-8783.78Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK  NVLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TATS LTI SP+GPSSHSANGVVNGDASSESTSHHTD S GG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKAKAYE GTSGHASPADQSEIDKLEQHLSNLRK                        ELVVKNLHIK
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLRDLVADVSTWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 301.6e-8683.78Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK   VLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TATS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKAKAYE GTS HASPADQSEIDKLEQHLSNLRK                        ELVVKNLHIK
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLRDLVADVSTWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 301.6e-8683.78Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK   VLAL QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA TATS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKAKAYE GTS HASPADQSEIDKLEQHLSNLRK                        ELVVKNLHIK
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLRDLVADVSTWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 306.7e-8581.53Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEKP NVL+L QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA T TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKAKA+E GTSGHASPADQSEIDKLEQHLSNLRK                        EL+VKNLHIK
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLR+LVADVSTWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 306.7e-8581.53Show/hide
Query:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEKP NVL+L QTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA T TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGG
Subjt:  MEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKAKA+E GTSGHASPADQSEIDKLEQHLSNLRK                        EL+VKNLHIK
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIK

Query:  LLIDQLRDLVADVSTWQSPCSV
        LLIDQLR+LVADVSTWQSPCSV
Subjt:  LLIDQLRDLVADVSTWQSPCSV

SwissProt top hitse value%identityAlignment
Q9FMV4 Mediator of RNA polymerase II transcription subunit 306.3e-4050.23Show/hide
Query:  SQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALE
        + TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LW    ST+AT +SA T    NG +  SA+      A+ + TSHH++ + GGG G  G   L+
Subjt:  SQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALE

Query:  EARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIKLLIDQLRDL
        EA  RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR                         E+  KN+H+K LID+LR+L
Subjt:  EARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIKLLIDQLRDL

Query:  VADVSTWQSPCSV
        +AD+STWQSPCSV
Subjt:  VADVSTWQSPCSV

Arabidopsis top hitse value%identityAlignment
AT5G63480.1 unknown protein4.5e-4150.23Show/hide
Query:  SQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALE
        + TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LW    ST+AT +SA T    NG +  SA+      A+ + TSHH++ + GGG G  G   L+
Subjt:  SQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALE

Query:  EARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIKLLIDQLRDL
        EA  RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR                         E+  KN+H+K LID+LR+L
Subjt:  EARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIKLLIDQLRDL

Query:  VADVSTWQSPCSV
        +AD+STWQSPCSV
Subjt:  VADVSTWQSPCSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTTCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGAT
CCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACAGCAGCAACGGCTACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCAT
CTTCGCATTCTGCGAATGGGGTTGTAAACGGCGATGCAAGTTCCGAAAGCACTAGCCATCACACCGATGGCAGCAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAA
GAGGCTCGCGCTCGCTACAAGAATTCAGTGCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCATATGAACCGGGTACGAGTGGCCATGC
ATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTCCTAGAATTGGCATTTTATTTTTCCTTCAACTACTATCTTACAAGGG
TCCTATACGTGGTGTCTTTGCAGGAACTTGTGGTTAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCT
TGTTCAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTTCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCAAGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGAT
CCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACAGCAGCAACGGCTACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCAT
CTTCGCATTCTGCGAATGGGGTTGTAAACGGCGATGCAAGTTCCGAAAGCACTAGCCATCACACCGATGGCAGCAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAA
GAGGCTCGCGCTCGCTACAAGAATTCAGTGCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCATATGAACCGGGTACGAGTGGCCATGC
ATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTCCTAGAATTGGCATTTTATTTTTCCTTCAACTACTATCTTACAAGGG
TCCTATACGTGGTGTCTTTGCAGGAACTTGTGGTTAAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCT
TGTTCAGTATGA
Protein sequenceShow/hide protein sequence
MMEEKPANVLALSQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALE
EARARYKNSVLALRAILAAIPNSQKAKAYEPGTSGHASPADQSEIDKLEQHLSNLRKVLELAFYFSFNYYLTRVLYVVSLQELVVKNLHIKLLIDQLRDLVADVSTWQSP
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