CuGenDBv2

Gene ID	Lag0033612
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Snurportin-1
Genome location	chr3:560403..562772
RNA-Seq Expression	Lag0033612
Synteny	Lag0033612
Gene Ontology terms	GO:0061015 - snRNA import into nucleus (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR017336 - Snurportin-1

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057774.1 snurportin-1 [Cucumis melo var. makuwa]

3.2e-32

87.36

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        L +LGLSSGNL+RFTIGDGGLTIVDG+IQGAD+   GKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDG   DTEMVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

KGN63485.1 hypothetical protein Csa_013248 [Cucumis sativus]

3.2e-32

87.36

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        L +LGLSSGNL+RFTIGDGGLTIVDGRIQGAD+   GKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDG   D+EMVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

XP_004138050.1 snurportin-1 [Cucumis sativus]

3.2e-32

87.36

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        L +LGLSSGNL+RFTIGDGGLTIVDGRIQGAD+   GKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDG   D+EMVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

XP_016903207.1 PREDICTED: snurportin-1 [Cucumis melo]

3.2e-32

87.36

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        L +LGLSSGNL+RFTIGDGGLTIVDG+IQGAD+   GKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDG   DTEMVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

XP_022135463.1 snurportin-1 [Momordica charantia]

3.2e-32

85.06

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        + + GLSS NL+RFTIGDGGLTIVDGRIQGAD+H +GKVNRARAFADSYSKVMFQ+AAR SPLKIDDLLASINSSNDGE RDT+MVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNL4 Snurportin-1

1.6e-32

87.36

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        L +LGLSSGNL+RFTIGDGGLTIVDGRIQGAD+   GKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDG   D+EMVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

A0A1S4E4Q9 Snurportin-1

1.6e-32

87.36

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        L +LGLSSGNL+RFTIGDGGLTIVDG+IQGAD+   GKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDG   DTEMVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

A0A5A7URL4 Snurportin-1

1.6e-32

87.36

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        L +LGLSSGNL+RFTIGDGGLTIVDG+IQGAD+   GKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDG   DTEMVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

A0A6J1C4W1 Snurportin-1

1.6e-32

85.06

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG
        + + GLSS NL+RFTIGDGGLTIVDGRIQGAD+H +GKVNRARAFADSYSKVMFQ+AAR SPLKIDDLLASINSSNDGE RDT+MVG
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

A0A6J1KQC3 Snurportin-1

1.8e-28

80.68

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSND-GEDRDTEMVG
        + + GLSSGNL+RF IGDGGLTIVDGRIQGAD+  VGKVN ARAFADSYSKVMFQYAAR SPLK+DDLL SINSSND  ED DTEM G
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSND-GEDRDTEMVG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24880.1 unknown protein

7.1e-22

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Query:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEM
        + Q GLSSG+L+RF IGDGGL  VDGR + AD+  +G  NRARAFADSYSK+MFQY AR SPLK++DL ++I S  D +D+  E+
Subjt:  LNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEM

Sequences

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CDS sequence

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ATGGCCAGGCCAACCACTCGATGGGGTATTCTTCCACCAATATTCAACCATAGGCAAGAAGGATGGATGTTACAGCCACATATTCTCGAACCGGAAAGGCGAAGCCTGTT
GGTGACAAAGAGGGAGAGTAAGGAGGCTCGTTTCACTTTGGGGGAGATTGAGGGTGTGCTGTTTGGTTCGGGAGTTGGCATTTTTATGGGTGGGAAAAAAATTCTTGATG
AGATTCGTATCACAGACCAGGAAGAAATCCTTTGTGGAAATCAATTTTGGGAAGGTAGGTCTGAGGGGAATCTTTGCCATATAGGTACCGAGCAAGGGAAGGAAGATTCT
TTTATTAATTTGAATCAGTTAGGGTTGTCTTCAGGTAATCTAATGCGATTCACCATTGGGGATGGAGGATTGACCATTGTGGACGGGAGGATTCAGGGGGCAGATATACA
TTGCGTTGGCAAGGTCAATCGAGCTAGAGCCTTTGCAGATAGTTACTCTAAGGTTATGTTTCAATATGCAGCTCGTCGCTCACCTTTAAAAATAGATGATCTATTAGCAT
CCATCAATTCATCGAACGATGGAGAAGATCGTGATACTGAAATGGTTGGGTAG

mRNA sequence

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Protein sequence

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MARPTTRWGILPPIFNHRQEGWMLQPHILEPERRSLLVTKRESKEARFTLGEIEGVLFGSGVGIFMGGKKILDEIRITDQEEILCGNQFWEGRSEGNLCHIGTEQGKEDS
FINLNQLGLSSGNLMRFTIGDGGLTIVDGRIQGADIHCVGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGEDRDTEMVG

Lag0033612 (gene) of Sponge gourd (AG-4) v1 genome