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Lag0033806 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033806
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationchr3:1984168..1986978
RNA-Seq ExpressionLag0033806
SyntenyLag0033806
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653153.1 hypothetical protein Csa_019571 [Cucumis sativus]3.5e-1367.16Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNTVWEDWTTMRKRNLEITQVRVVVGHI
        GFDEYMNLVLDDAEEVN+KKKSKKALGRILLKGDNITLMMN+   +     KR   I+++ V+ G++
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNTVWEDWTTMRKRNLEITQVRVVVGHI

KAG7035720.1 putative small nuclear ribonucleoprotein E [Cucurbita argyrosperma subsp. argyrosperma]4.5e-2156.91Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT---VWE-----------------DWTTMRKRNLEITQVRVVVGHIWGQGIAPLRS---
        GFDEYMNLVLDDAEEVNIKKKSKK LGRILLKGDNITLMMNT    WE                 DWTT RKR LEITQ  V  G  W QGIAP RS   
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT---VWE-----------------DWTTMRKRNLEITQVRVVVGHIWGQGIAPLRS---

Query:  --------RNPMSSAFNWTLRIL
                 N ++S   W  R L
Subjt:  --------RNPMSSAFNWTLRIL

XP_022921759.1 small nuclear ribonucleoprotein E-like isoform X1 [Cucurbita moschata]7.8e-1395.35Show/hide
Query:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        +GFDEYMNLVLDDAEEVN+KKKSKKALGRILLKGDNITLMMNT
Subjt:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

XP_022988523.1 small nuclear ribonucleoprotein E-like isoform X1 [Cucurbita maxima]7.8e-1395.35Show/hide
Query:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        +GFDEYMNLVLDDAEEVN+KKKSKKALGRILLKGDNITLMMNT
Subjt:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

XP_038880616.1 small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida]1.0e-1297.62Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        GFDEYMNLVLDDAEEVN+KKKSKKALGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

TrEMBL top hitse value%identityAlignment
A0A5N5JA39 Small nuclear ribonucleoprotein E6.4e-1395.35Show/hide
Query:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        +GFDEYMNLVLDDAEEVNIKKKSKK+LGRILLKGDNITLMMNT
Subjt:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

A0A6J1E1F5 Small nuclear ribonucleoprotein E3.8e-1395.35Show/hide
Query:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        +GFDEYMNLVLDDAEEVN+KKKSKKALGRILLKGDNITLMMNT
Subjt:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

A0A6J1E6Q3 Small nuclear ribonucleoprotein E4.9e-1397.62Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        GFDEYMNLVLDDAEEVN+KKKSKKALGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

A0A6J1JLU4 Small nuclear ribonucleoprotein E4.9e-1397.62Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        GFDEYMNLVLDDAEEVN+KKKSKKALGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

A0A6J1JMJ0 Small nuclear ribonucleoprotein E3.8e-1395.35Show/hide
Query:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        +GFDEYMNLVLDDAEEVN+KKKSKKALGRILLKGDNITLMMNT
Subjt:  EGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

SwissProt top hitse value%identityAlignment
A4FUI2 Small nuclear ribonucleoprotein E2.2e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E2.2e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E2.2e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E2.2e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN
        GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN

Q7ZUG0 Small nuclear ribonucleoprotein E1.7e-1075.61Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN
        GFDEYMNLVLDDAEEV++K K++K LGRI+LKGDNITL+ +
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein5.7e-1485.71Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT
        GFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNT
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNT

AT2G18740.2 Small nuclear ribonucleoprotein family protein1.7e-0577.78Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALG
        GFDEYMNLVLD+AEEV+IKK ++K LG
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALG

AT4G30330.1 Small nuclear ribonucleoprotein family protein5.7e-1487.8Show/hide
Query:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN
        GFDEYMNLVLD+AEEV+IKKK++K LGRILLKGDNITLMMN
Subjt:  GFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGAGGGATTTGATGAGTACATGAATTTGGTTCTTGATGATGCTGAGGAAGTTAATATTAAGAAAAAGAGTAAAAAGGCCCTTGGGAGGATTCTCCTCAAAGGAGA
CAATATTACGTTAATGATGAACACGGTGTGGGAAGATTGGACTACGATGCGAAAGAGAAATTTGGAGATAACCCAAGTAAGAGTGGTGGTGGGACACATATGGGGTCAGG
GAATCGCACCCCTCAGGTCACGTAACCCCATGTCCTCTGCTTTCAACTGGACCCTTCGGATTCTTTGGGAGGTCACTGATGCCCTTTGCCCATGTGAGTTTGGGGTATGC
TTTCATCAGAATGGGGTCCCAAATGGTACACTAGCAGCTAGAAAAGAAACCAAGCATCCGCCGCGTGAGAAATCGGATAGGATAAGAAAGGCTGTGTTGAAAGGAATAAA
AACTTGGGGGGTTAATTCAAGCAGCACTCGAGACCTGCCAAGACTTGAGACAGAAAAAGATCCTGAAAATGGGCCTCGAAAATTCTGCAAATCAGATTTGTATGTCATTG
CCGTCCGAAACATAATAAAGAAGAACTGGGGTCGACATCTACACTCATTCCATTACATGGACACAAACACAATTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGAGGGATTTGATGAGTACATGAATTTGGTTCTTGATGATGCTGAGGAAGTTAATATTAAGAAAAAGAGTAAAAAGGCCCTTGGGAGGATTCTCCTCAAAGGAGA
CAATATTACGTTAATGATGAACACGGTGTGGGAAGATTGGACTACGATGCGAAAGAGAAATTTGGAGATAACCCAAGTAAGAGTGGTGGTGGGACACATATGGGGTCAGG
GAATCGCACCCCTCAGGTCACGTAACCCCATGTCCTCTGCTTTCAACTGGACCCTTCGGATTCTTTGGGAGGTCACTGATGCCCTTTGCCCATGTGAGTTTGGGGTATGC
TTTCATCAGAATGGGGTCCCAAATGGTACACTAGCAGCTAGAAAAGAAACCAAGCATCCGCCGCGTGAGAAATCGGATAGGATAAGAAAGGCTGTGTTGAAAGGAATAAA
AACTTGGGGGGTTAATTCAAGCAGCACTCGAGACCTGCCAAGACTTGAGACAGAAAAAGATCCTGAAAATGGGCCTCGAAAATTCTGCAAATCAGATTTGTATGTCATTG
CCGTCCGAAACATAATAAAGAAGAACTGGGGTCGACATCTACACTCATTCCATTACATGGACACAAACACAATTTGCTGA
Protein sequenceShow/hide protein sequence
MREGFDEYMNLVLDDAEEVNIKKKSKKALGRILLKGDNITLMMNTVWEDWTTMRKRNLEITQVRVVVGHIWGQGIAPLRSRNPMSSAFNWTLRILWEVTDALCPCEFGVC
FHQNGVPNGTLAARKETKHPPREKSDRIRKAVLKGIKTWGVNSSSTRDLPRLETEKDPENGPRKFCKSDLYVIAVRNIIKKNWGRHLHSFHYMDTNTIC