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Lag0033852 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033852
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReplication protein A 32 kDa subunit B
Genome locationchr3:2314691..2315233
RNA-Seq ExpressionLag0033852
SyntenyLag0033852
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058272.1 hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa]9.5e-6074.87Show/hide
Query:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI
        AKDH LH LSEKP SLLQAN+ FV+KILSRNSSFGRSARLPAC LPGQIPFNWE QPGLPK+QPSE  PPA++ PP  S S  GLSK P +VPKQ PVKI
Subjt:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI

Query:  WFWKKPKRKV--VVKKNGAFGS----RRHVDRESEVC-RKSNDE---SASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF
        WFW K +RK    VKKNGA GS    RRHVDRESE C RKSNDE   S+SLSCISYSLSS+SSSASSS+ Y  RRRSKL SLAK FIRWAF
Subjt:  WFWKKPKRKV--VVKKNGAFGS----RRHVDRESEVC-RKSNDE---SASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF

KAG6589705.1 Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5471.35Show/hide
Query:  MAKDHHLHLSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVP-KQEPVK
        M  +H LHLSE P SLLQANELFV+KILSRNSS GRSARLPACRLPGQIPF WEAQPGLPKD+PSE     ++ PP    S  G SK P  VP +QE  K
Subjt:  MAKDHHLHLSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVP-KQEPVK

Query:  IWFWKKPKRKV--VVKKNGAFG----SRRHVDRESEVCRKSNDE-SASLSCISYSLSSSSSSASSSNGYARRRSKLSSLAKGFIR
        IWFW KP++K+  VVKKNGAFG    SRRHV++ESE  RKSNDE S+SLSCIS+SLSSSS   SSSNGYARRRSKLSSLAKGF+R
Subjt:  IWFWKKPKRKV--VVKKNGAFG----SRRHVDRESEVCRKSNDE-SASLSCISYSLSSSSSSASSSNGYARRRSKLSSLAKGFIR

KGN65459.1 hypothetical protein Csa_020126 [Cucumis sativus]2.6e-5772.63Show/hide
Query:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI
        AKDH LH LSEKP SLLQAN+LFV+KILSRNSSFGRSARLPAC LPGQ+PFNWEAQPGLPK+QPS+  PP  + PP  S S  GLSK P +VPKQ PVKI
Subjt:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI

Query:  WFWKKPKRKV--VVKKNGAFGS---RRHVDRESEVCR-KSNDE---SASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF
        WFW K +RK    VKK+GA GS   RRHVDR+SE CR KSNDE   S+SLSCISYS+SS+SSSASSS+ Y  RRR KL SLAK FIRWAF
Subjt:  WFWKKPKRKV--VVKKNGAFGS---RRHVDRESEVCR-KSNDE---SASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF

TYK11824.1 hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa]3.6e-5974.35Show/hide
Query:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI
        AKDH LH LSEKP SLLQAN+ FV+KILSRNSSFGRSARLPAC LPGQIPFNWE QPGLPK+QPSE  PPA++ PP  S S  GLSK P +VPKQ PVKI
Subjt:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI

Query:  WFWKKPKRKV--VVKKNGAFGS----RRHVDRESEVC-RKSND---ESASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF
        WFW K +RK    VKKNGA GS    RRHVDRESE C RKSND    S+SLSCISYSLSS+SSSASSS+ Y  RRRSKL SLAK FIRWAF
Subjt:  WFWKKPKRKV--VVKKNGAFGS----RRHVDRESEVC-RKSND---ESASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF

XP_022987494.1 uncharacterized protein LOC111485037 [Cucurbita maxima]9.2e-5569.43Show/hide
Query:  MAKDHHLHLSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPK-QEPVK
        M  DH LH SE P SLLQANELFV+KILSRNSS GRSARLPACRLPGQIPF WEAQPGLPKD+PSE     ++ PP       G SK P  VPK QE  K
Subjt:  MAKDHHLHLSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPK-QEPVK

Query:  IWFWKKPKRKV--VVKKNGAFG----SRRHVDRESEVCRKSNDES------ASLSCISYSLSSSSSSASSSNGYARRRSKLSSLAKGFIRWAF
        IW W KP++K+  VVKKNGAFG    SR HV++ESE CRKSNDES      +SLSCIS+SLSSSS   SSSNGYARRRSKLSSLAKGF+RWAF
Subjt:  IWFWKKPKRKV--VVKKNGAFG----SRRHVDRESEVCRKSNDES------ASLSCISYSLSSSSSSASSSNGYARRRSKLSSLAKGFIRWAF

TrEMBL top hitse value%identityAlignment
A0A0A0LWV3 Uncharacterized protein1.3e-5772.63Show/hide
Query:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI
        AKDH LH LSEKP SLLQAN+LFV+KILSRNSSFGRSARLPAC LPGQ+PFNWEAQPGLPK+QPS+  PP  + PP  S S  GLSK P +VPKQ PVKI
Subjt:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI

Query:  WFWKKPKRKV--VVKKNGAFGS---RRHVDRESEVCR-KSNDE---SASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF
        WFW K +RK    VKK+GA GS   RRHVDR+SE CR KSNDE   S+SLSCISYS+SS+SSSASSS+ Y  RRR KL SLAK FIRWAF
Subjt:  WFWKKPKRKV--VVKKNGAFGS---RRHVDRESEVCR-KSNDE---SASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF

A0A5A7UQX0 Uncharacterized protein4.6e-6074.87Show/hide
Query:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI
        AKDH LH LSEKP SLLQAN+ FV+KILSRNSSFGRSARLPAC LPGQIPFNWE QPGLPK+QPSE  PPA++ PP  S S  GLSK P +VPKQ PVKI
Subjt:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI

Query:  WFWKKPKRKV--VVKKNGAFGS----RRHVDRESEVC-RKSNDE---SASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF
        WFW K +RK    VKKNGA GS    RRHVDRESE C RKSNDE   S+SLSCISYSLSS+SSSASSS+ Y  RRRSKL SLAK FIRWAF
Subjt:  WFWKKPKRKV--VVKKNGAFGS----RRHVDRESEVC-RKSNDE---SASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF

A0A5D3CKX4 Uncharacterized protein1.8e-5974.35Show/hide
Query:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI
        AKDH LH LSEKP SLLQAN+ FV+KILSRNSSFGRSARLPAC LPGQIPFNWE QPGLPK+QPSE  PPA++ PP  S S  GLSK P +VPKQ PVKI
Subjt:  AKDHHLH-LSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKI

Query:  WFWKKPKRKV--VVKKNGAFGS----RRHVDRESEVC-RKSND---ESASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF
        WFW K +RK    VKKNGA GS    RRHVDRESE C RKSND    S+SLSCISYSLSS+SSSASSS+ Y  RRRSKL SLAK FIRWAF
Subjt:  WFWKKPKRKV--VVKKNGAFGS----RRHVDRESEVC-RKSND---ESASLSCISYSLSSSSSSASSSNGY-ARRRSKLSSLAKGFIRWAF

A0A6J1JJ17 uncharacterized protein LOC1114850374.5e-5569.43Show/hide
Query:  MAKDHHLHLSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPK-QEPVK
        M  DH LH SE P SLLQANELFV+KILSRNSS GRSARLPACRLPGQIPF WEAQPGLPKD+PSE     ++ PP       G SK P  VPK QE  K
Subjt:  MAKDHHLHLSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPK-QEPVK

Query:  IWFWKKPKRKV--VVKKNGAFG----SRRHVDRESEVCRKSNDES------ASLSCISYSLSSSSSSASSSNGYARRRSKLSSLAKGFIRWAF
        IW W KP++K+  VVKKNGAFG    SR HV++ESE CRKSNDES      +SLSCIS+SLSSSS   SSSNGYARRRSKLSSLAKGF+RWAF
Subjt:  IWFWKKPKRKV--VVKKNGAFG----SRRHVDRESEVCRKSNDES------ASLSCISYSLSSSSSSASSSNGYARRRSKLSSLAKGFIRWAF

A0A6J5TFB4 Uncharacterized protein2.3e-1135.27Show/hide
Query:  KPISLLQANELFVNKILSRNSSFG-RSARLPACRLPGQIPFNWEAQPGLPK----DQPSE--------ILPPADIAPPDGSGSGGGLSKLPRIVPKQEPV
        K +++  ANE+F NKILSRNSS G  S+R    R+ G +PF WEA+PG PK    D+  +          PP  I PP  + S   ++ LP         
Subjt:  KPISLLQANELFVNKILSRNSSFG-RSARLPACRLPGQIPFNWEAQPGLPK----DQPSE--------ILPPADIAPPDGSGSGGGLSKLPRIVPKQEPV

Query:  KIWFWKKPKRKVVVKKNGAFGSRRHVD------------RESEVCRKSNDE--------SASLSCISYSLSSS-----SSSASSSNGYARRRSKLSSLAK
        ++W WKK K+   +K+     ++ +V+             ++++C KS++E        S++ SC S SLSS+     SSS+SS++    R SK+  LA+
Subjt:  KIWFWKKPKRKVVVKKNGAFGSRRHVD------------RESEVCRKSNDE--------SASLSCISYSLSSS-----SSSASSSNGYARRRSKLSSLAK

Query:  GFIRWAF
        GFIRWAF
Subjt:  GFIRWAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAAGATCATCATCTTCATCTCTCTGAAAAACCCATTTCATTACTCCAAGCAAATGAGTTATTCGTCAACAAAATCCTCTCCAGAAACTCTTCATTCGGCCGCTC
TGCCCGGCTCCCTGCCTGCCGCCTGCCCGGCCAAATCCCCTTCAATTGGGAAGCGCAGCCCGGGCTGCCCAAAGACCAACCCTCGGAAATTCTCCCGCCGGCCGACATCG
CGCCACCGGATGGCTCCGGTTCCGGCGGAGGCCTCTCGAAACTCCCCCGCATAGTCCCTAAGCAGGAGCCTGTTAAGATTTGGTTTTGGAAAAAGCCGAAGAGAAAAGTC
GTTGTTAAGAAAAACGGTGCGTTTGGATCGAGACGACATGTAGATCGTGAGAGTGAGGTTTGTAGAAAATCAAACGACGAGTCGGCGTCGTTGTCTTGTATTTCTTACTC
CTTGTCTTCTAGTTCTTCTTCGGCCTCGTCATCAAATGGCTATGCCCGACGCCGGTCTAAACTCAGCAGCCTGGCCAAAGGGTTCATAAGGTGGGCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAAGATCATCATCTTCATCTCTCTGAAAAACCCATTTCATTACTCCAAGCAAATGAGTTATTCGTCAACAAAATCCTCTCCAGAAACTCTTCATTCGGCCGCTC
TGCCCGGCTCCCTGCCTGCCGCCTGCCCGGCCAAATCCCCTTCAATTGGGAAGCGCAGCCCGGGCTGCCCAAAGACCAACCCTCGGAAATTCTCCCGCCGGCCGACATCG
CGCCACCGGATGGCTCCGGTTCCGGCGGAGGCCTCTCGAAACTCCCCCGCATAGTCCCTAAGCAGGAGCCTGTTAAGATTTGGTTTTGGAAAAAGCCGAAGAGAAAAGTC
GTTGTTAAGAAAAACGGTGCGTTTGGATCGAGACGACATGTAGATCGTGAGAGTGAGGTTTGTAGAAAATCAAACGACGAGTCGGCGTCGTTGTCTTGTATTTCTTACTC
CTTGTCTTCTAGTTCTTCTTCGGCCTCGTCATCAAATGGCTATGCCCGACGCCGGTCTAAACTCAGCAGCCTGGCCAAAGGGTTCATAAGGTGGGCCTTTTGA
Protein sequenceShow/hide protein sequence
MAKDHHLHLSEKPISLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADIAPPDGSGSGGGLSKLPRIVPKQEPVKIWFWKKPKRKV
VVKKNGAFGSRRHVDRESEVCRKSNDESASLSCISYSLSSSSSSASSSNGYARRRSKLSSLAKGFIRWAF