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Lag0033915 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0033915
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr3:2915804..2918437
RNA-Seq ExpressionLag0033915
SyntenyLag0033915
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4359769.1 hypothetical protein F8388_008331 [Cannabis sativa]1.3e-0525.54Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN
        R +PS SN++ +  WW   WRL +P K   F Y     ++     ++N        C + +   +S  H  FE     MK++    +F L +   W  WN
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN

Query:  LWNSLSW-----------------------GAGQLGVHEER------CVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG
          N+  +                          + G H +        VW PPP G LKLN DA++     + GGG ++R   G
Subjt:  LWNSLSW-----------------------GAGQLGVHEER------CVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG

KAF4361707.1 hypothetical protein F8388_026397 [Cannabis sativa]4.4e-0622.38Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSKHKFFY----------------------------GDCFMTV------CL-LRGMWNCSKFAPLHQSFFHFQFEE
        R +PS SN++ +  WW   WRL +P K + F                               CF +V      C  ++  W+ + F  + ++  H    +
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSKHKFFY----------------------------GDCFMTV------CL-LRGMWNCSKFAPLHQSFFHFQFEE

Query:  IIGAMKESLPGPDFELVVIFWWSVWNLWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAG
        I+  M+ +    +F L +   W  WN  N+                               W   Q     +  VW PPP G LKLN DA++       G
Subjt:  IIGAMKESLPGPDFELVVIFWWSVWNLWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAG

Query:  GGCVLRGADG
        GG ++R   G
Subjt:  GGCVLRGADG

KAF4364303.1 hypothetical protein G4B88_028423 [Cannabis sativa]6.8e-0726.09Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN
        R +PS SN++ +  WW   WRL +P K   F Y     ++     ++N        C K +   +S  H  FE     MK++    +F L +   W  WN
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN

Query:  LWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG
          N+                               W   Q     +  VW PPP G LKLN DA++       GGG ++R   G
Subjt:  LWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG

KAF4383936.1 hypothetical protein G4B88_016369 [Cannabis sativa]1.3e-0525.54Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN
        R +PS SN++ +  WW   WRL +P K   F Y     ++     ++N        C + +   +S  H  FE     MK++    +F L +   W  WN
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN

Query:  LWNSLSW-----------------------GAGQLGVHEER------CVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG
          N+  +                          + G H +        VW PPP G LKLN DA++     + GGG ++R   G
Subjt:  LWNSLSW-----------------------GAGQLGVHEER------CVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG

KAF4395712.1 hypothetical protein G4B88_013486 [Cannabis sativa]1.7e-0525.54Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN
        R +PS SN++ +  WW   WRL +P K   F Y     ++     ++N        C + +   +S  H  FE     MK++    +F L +   W  WN
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN

Query:  LWNSLSW-----------------------GAGQLGVHEER------CVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG
          N+  +                          + G H +        VW PPP G LKLN DA++       GGG ++R   G
Subjt:  LWNSLSW-----------------------GAGQLGVHEER------CVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG

TrEMBL top hitse value%identityAlignment
A0A7J6EPY6 Uncharacterized protein6.2e-0625.54Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN
        R +PS SN++ +  WW   WRL +P K   F Y     ++     ++N        C + +   +S  H  FE     MK++    +F L +   W  WN
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN

Query:  LWNSLSW-----------------------GAGQLGVHEER------CVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG
          N+  +                          + G H +        VW PPP G LKLN DA++     + GGG ++R   G
Subjt:  LWNSLSW-----------------------GAGQLGVHEER------CVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG

A0A7J6ETE0 Uncharacterized protein2.1e-0622.38Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSKHKFFY----------------------------GDCFMTV------CL-LRGMWNCSKFAPLHQSFFHFQFEE
        R +PS SN++ +  WW   WRL +P K + F                               CF +V      C  ++  W+ + F  + ++  H    +
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSKHKFFY----------------------------GDCFMTV------CL-LRGMWNCSKFAPLHQSFFHFQFEE

Query:  IIGAMKESLPGPDFELVVIFWWSVWNLWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAG
        I+  M+ +    +F L +   W  WN  N+                               W   Q     +  VW PPP G LKLN DA++       G
Subjt:  IIGAMKESLPGPDFELVVIFWWSVWNLWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAG

Query:  GGCVLRGADG
        GG ++R   G
Subjt:  GGCVLRGADG

A0A7J6F0S9 Uncharacterized protein3.3e-0726.09Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN
        R +PS SN++ +  WW   WRL +P K   F Y     ++     ++N        C K +   +S  H  FE     MK++    +F L +   W  WN
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSK-HKFFYGDCFMTVCLLRGMWN--------CSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWN

Query:  LWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG
          N+                               W   Q     +  VW PPP G LKLN DA++       GGG ++R   G
Subjt:  LWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG

A0A803PBD1 Uncharacterized protein1.2e-0625.27Show/hide
Query:  RGRPSPSNSDGIRAWWSGFWRLNVPSKHKFFY-----------GDCFMTVCLLRGMWNCSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSV
        R +PS SN++ +  WW   W L +P K + F             + F   C+   +  C + +   +S  H  FE     MK++    +F L +   W  
Subjt:  RGRPSPSNSDGIRAWWSGFWRLNVPSKHKFFY-----------GDCFMTVCLLRGMWNCSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSV

Query:  WNLWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG
        WN  N+                               W   Q     +  VW PPP G LKLN DA+V       GGG ++R   G
Subjt:  WNLWNS-----------------------------LSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADG

A0A803Q185 Uncharacterized protein1.2e-0625.23Show/hide
Query:  EKRVSAGHMLAGRGRPSPSNSDGIRA--WWSGFWRLNVPSKHKFFY-------------------------GDCFM--TVCLLRGMWNCSKFAPLHQSFF
        E  V +G+ +A   +     SD   A  WW   WRL +P K K F                            C +  +  +   +W C K + +     
Subjt:  EKRVSAGHMLAGRGRPSPSNSDGIRA--WWSGFWRLNVPSKHKFFY-------------------------GDCFM--TVCLLRGMWNCSKFAPLHQSFF

Query:  HFQFE--------EIIGAMKES--LPGPDFELVVIFWWSVWNLWNS-------------LSW------------GAGQLGVHEERCVWRPPPAGELKLNV
         FQ E        E+   M+ S  +    FE+ ++  WS+WN  N+             + W               Q  +  E  VW+ P  GE+K+NV
Subjt:  HFQFE--------EIIGAMKES--LPGPDFELVVIFWWSVWNLWNS-------------LSW------------GAGQLGVHEERCVWRPPPAGELKLNV

Query:  DASVRPDLGEAGGGCVLRGADG
        DASV+   G +G GCV+RG  G
Subjt:  DASVRPDLGEAGGGCVLRGADG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTTTTCTGTGAAAAGCGGGTATCGGCTGGCCATATGTTGGCCGGTCGGGGTCGACCTTCACCTTCGAACTCTGATGGGATTCGCGCGTGGTGGTCTGGCTTTTG
GAGGCTGAATGTGCCCAGCAAGCATAAGTTTTTCTATGGCGATTGCTTCATGACCGTCTGCCTACTAAGGGGTATGTGGAATTGCTCCAAATTTGCTCCACTTCATCAGT
CATTTTTCCACTTCCAGTTCGAGGAGATCATTGGGGCGATGAAGGAAAGCCTTCCGGGACCGGATTTTGAGCTTGTGGTCATCTTCTGGTGGTCTGTGTGGAATCTTTGG
AATAGTCTGAGTTGGGGGGCAGGCCAGCTGGGTGTTCACGAGGAGCGCTGTGTGTGGAGGCCGCCTCCTGCTGGGGAGCTAAAACTTAATGTCGATGCTTCGGTCAGGCC
TGATTTAGGGGAGGCTGGGGGCGGCTGTGTACTGCGTGGGGCTGACGGATGTTTCGGAAGTAGGGCGGCTGATGGAGGATGTACGAATGATCCTCCAGCCTTGGGACAAC
AACAAGTTTTGTTTTCGCCACGCCAGGGAAACAGGGTGGCGCATGTTCTGGCTAGCCTGGCCTTTTCTTATGTTGACAGTGTTTGGCTTGAAGAAGGGCCTAGCGAAATT
TCTGATGTTCTAAGTGTAGGGGAAGATGGGTGGAGGGGGCTTATAAATCCTGCCAGGGCAAGTAGGACGACTCTAGGGAAGGCTTATCACACACTCACGCGAGAGTTTCC
GCTAGTGTTCTCATTGGGCTGGAGACCCGGTGTTGCCAAGTCTTCCGTGGAGTGTTCCTTCAATCAGTTTTTCGAGGACCTGTCTCGGCTGATGGCAGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTTTTCTGTGAAAAGCGGGTATCGGCTGGCCATATGTTGGCCGGTCGGGGTCGACCTTCACCTTCGAACTCTGATGGGATTCGCGCGTGGTGGTCTGGCTTTTG
GAGGCTGAATGTGCCCAGCAAGCATAAGTTTTTCTATGGCGATTGCTTCATGACCGTCTGCCTACTAAGGGGTATGTGGAATTGCTCCAAATTTGCTCCACTTCATCAGT
CATTTTTCCACTTCCAGTTCGAGGAGATCATTGGGGCGATGAAGGAAAGCCTTCCGGGACCGGATTTTGAGCTTGTGGTCATCTTCTGGTGGTCTGTGTGGAATCTTTGG
AATAGTCTGAGTTGGGGGGCAGGCCAGCTGGGTGTTCACGAGGAGCGCTGTGTGTGGAGGCCGCCTCCTGCTGGGGAGCTAAAACTTAATGTCGATGCTTCGGTCAGGCC
TGATTTAGGGGAGGCTGGGGGCGGCTGTGTACTGCGTGGGGCTGACGGATGTTTCGGAAGTAGGGCGGCTGATGGAGGATGTACGAATGATCCTCCAGCCTTGGGACAAC
AACAAGTTTTGTTTTCGCCACGCCAGGGAAACAGGGTGGCGCATGTTCTGGCTAGCCTGGCCTTTTCTTATGTTGACAGTGTTTGGCTTGAAGAAGGGCCTAGCGAAATT
TCTGATGTTCTAAGTGTAGGGGAAGATGGGTGGAGGGGGCTTATAAATCCTGCCAGGGCAAGTAGGACGACTCTAGGGAAGGCTTATCACACACTCACGCGAGAGTTTCC
GCTAGTGTTCTCATTGGGCTGGAGACCCGGTGTTGCCAAGTCTTCCGTGGAGTGTTCCTTCAATCAGTTTTTCGAGGACCTGTCTCGGCTGATGGCAGGCTGA
Protein sequenceShow/hide protein sequence
MGFFCEKRVSAGHMLAGRGRPSPSNSDGIRAWWSGFWRLNVPSKHKFFYGDCFMTVCLLRGMWNCSKFAPLHQSFFHFQFEEIIGAMKESLPGPDFELVVIFWWSVWNLW
NSLSWGAGQLGVHEERCVWRPPPAGELKLNVDASVRPDLGEAGGGCVLRGADGCFGSRAADGGCTNDPPALGQQQVLFSPRQGNRVAHVLASLAFSYVDSVWLEEGPSEI
SDVLSVGEDGWRGLINPARASRTTLGKAYHTLTREFPLVFSLGWRPGVAKSSVECSFNQFFEDLSRLMAG