CuGenDBv2

Gene ID	Lag0033919
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RanBP2-type domain-containing protein
Genome location	chr3:2950625..2950927
RNA-Seq Expression	Lag0033919
Synteny	Lag0033919
Gene Ontology terms	GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0004519 - endonuclease activity (molecular function) GO:0004527 - exonuclease activity (molecular function) GO:0005507 - copper ion binding (molecular function) GO:0016491 - oxidoreductase activity (molecular function)
InterPro domains	IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573182.1 Tyrosyl-DNA phosphodiesterase 2, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-41

84.85

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF +NSIM RELC+ANLEVQ G+SLTVATSHLESPCPAPPKWNQ YSKE VIQAKEAIDFL  NPNV+FGGDMNWDDKLDG+FPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

KAG7012360.1 Tyrosyl-DNA phosphodiesterase 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-41

88.54

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Query:  SNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        S LPVKSFSCQPF  NSIM RELCIANLEVQ G+SLTVATSHLESPCPAPPKWNQ YSKE VIQAKEAIDFLK NPNV+FGGDMNWDDKLDG+FPF
Subjt:  SNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

XP_022994193.1 uncharacterized protein LOC111490005 [Cucurbita maxima]

3.2e-41

85.86

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF +NSIM RELCIANLEVQ G+SLTVATSHLESPCPAPPKWNQ YSKE VIQAKEAI+FLK NPNV+FGGDMNWDDKLDG+FPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

XP_023542187.1 uncharacterized protein LOC111802155 [Cucurbita pepo subsp. pepo]

5.5e-41

84.85

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF +NSIM RELC+ANLEVQ G+SLTVATSHLESPCPAPPKWNQ YSKE VIQAKEAIDFLK NPNV+FGGDMNWDDK DG+FPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

XP_038893809.1 tyrosyl-DNA phosphodiesterase 2 [Benincasa hispida]

8.5e-42

88.89

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF  NSIM RELCIANLEVQKGIS TVATSHLESPCPAPPKWNQ YSKE VIQAKEAIDFLK  PNVIFGGDMNWDDKLDGRFPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B294 tyrosyl-DNA phosphodiesterase 2

1.7e-40

83.84

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF  NSIM RELCI NLEVQ GISLTVATSHLESPCPAPPKWNQ YSKE V+QAK+A+DFLK  PNVIFGGDMNWDDKLDG+FPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

A0A5D3BK81 L-ascorbate oxidase-like protein

1.7e-40

83.84

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF  NSIM RELCI NLEVQ GISLTVATSHLESPCPAPPKWNQ YSKE V+QAK+A+DFLK  PNVIFGGDMNWDDKLDG+FPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

A0A6J1GQX2 uncharacterized protein LOC111456698

1.0e-40

83.84

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF +NSIM RELC+ANLEVQ G+SLTVATSHLESPCPAPPKWNQ YSKE VIQAKEAIDFL  NPNV+FGGDMNWDDK DG+FPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

A0A6J1K4H6 uncharacterized protein LOC111490005

1.6e-41

85.86

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF +NSIM RELCIANLEVQ G+SLTVATSHLESPCPAPPKWNQ YSKE VIQAKEAI+FLK NPNV+FGGDMNWDDKLDG+FPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

E5GC61 Endonuclease/exonuclease/phosphatase family protein

1.7e-40

83.84

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF
        M  S LPVKSFSCQPF  NSIM RELCI NLEVQ GISLTVATSHLESPCPAPPKWNQ YSKE V+QAK+A+DFLK  PNVIFGGDMNWDDKLDG+FPF
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11800.1 endonuclease/exonuclease/phosphatase family protein

3.9e-29

65.31

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Query:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFP
        M  S L VKSFS + F  NSIM REL IA +EV     L  ATSHLESPCP PPKW+Q +S+E V QAKEAI+ L+ N NVIFGGDMNW DKLDG+FP
Subjt:  MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFP

Sequences

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CDS sequence

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ATGTGTAAGAGCAATCTGCCTGTGAAATCCTTTAGTTGCCAACCATTTGCCAATAATTCTATAATGAGGAGAGAACTTTGTATTGCCAATCTTGAAGTTCAAAAGGGCAT
TTCATTGACAGTTGCAACAAGTCATCTTGAGAGTCCTTGCCCTGCACCTCCAAAGTGGAATCAAAAGTATAGCAAAGAGAGTGTAATTCAAGCCAAAGAAGCCATTGACT
TTCTCAAGGGAAATCCTAATGTCATTTTCGGTGGTGACATGAACTGGGATGATAAATTGGATGGTCGATTTCCTTTTTCCTGA

mRNA sequence

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Protein sequence

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MCKSNLPVKSFSCQPFANNSIMRRELCIANLEVQKGISLTVATSHLESPCPAPPKWNQKYSKESVIQAKEAIDFLKGNPNVIFGGDMNWDDKLDGRFPFS

Lag0033919 (gene) of Sponge gourd (AG-4) v1 genome