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Lag0034315 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034315
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionR2r3-myb transcription factor, putative
Genome locationchr3:6267131..6267957
RNA-Seq ExpressionLag0034315
SyntenyLag0034315
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040758.1 transcriptional activator Myb [Cucumis melo var. makuwa]2.7e-1164.06Show/hide
Query:  MMRSRSSGVT-------------SCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        MMRSRSS  +             SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  MMRSRSSGVT-------------SCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

KAG6571346.1 Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia]6.0e-1164.18Show/hide
Query:  MMRSRSS-------GV---------TSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        MMRSRSS       GV          SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  MMRSRSS-------GV---------TSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

XP_004147366.1 transcription factor MYB52 [Cucumis sativus]2.7e-1182.61Show/hide
Query:  SSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        SSGV SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  SSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

XP_008460890.2 PREDICTED: transcriptional activator Myb [Cucumis melo]2.7e-1182.61Show/hide
Query:  SSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        SSGV SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  SSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

XP_038902736.1 transcription factor MYB52-like [Benincasa hispida]2.7e-1164.06Show/hide
Query:  MMRSRSSGVT-------------SCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        MMRSRSS  +             SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  MMRSRSSGVT-------------SCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

TrEMBL top hitse value%identityAlignment
A0A0A0LM98 Uncharacterized protein1.3e-1182.61Show/hide
Query:  SSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        SSGV SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  SSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

A0A1S3CEN7 transcriptional activator Myb1.3e-1182.61Show/hide
Query:  SSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        SSGV SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  SSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

A0A5D3BQW6 Transcriptional activator Myb1.3e-1164.06Show/hide
Query:  MMRSRSSGVT-------------SCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        MMRSRSS  +             SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  MMRSRSSGVT-------------SCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

A0A6J1EVU5 transcription factor CSA-like2.9e-1164.18Show/hide
Query:  MMRSRSS-------GV---------TSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        MMRSRSS       GV          SCYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FEGRS  S
Subjt:  MMRSRSS-------GV---------TSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

A0A6J1KY48 transcription factor CSA-like3.8e-1179.17Show/hide
Query:  SRSSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        S SSGVT CYRGH RPAE+NKLRQ V+QFGPQNWNYIAE FE RS  S
Subjt:  SRSSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

SwissProt top hitse value%identityAlignment
Q5NBM8 Transcription factor CSA1.9e-0762.5Show/hide
Query:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        C RGH RPAE+ KL+  V Q+GPQNWN IAE  +GRS  S
Subjt:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

Q6R0C4 Transcription factor MYB521.1e-0762.5Show/hide
Query:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        C RGH RPAE+ KLR+ V+QFGP NWN IA+   GRS  S
Subjt:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

Q9FX36 Transcription factor MYB544.7e-0657.5Show/hide
Query:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        C RGH RPAE+ KL+  V+Q+GP NWN IA    GRS  S
Subjt:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

Q9LQX5 Transcription factor MYB1174.7e-0654.17Show/hide
Query:  SRSSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        S SS  +   RGH RPAE+ KL++ V  +GPQNWN IAE  +GRS  S
Subjt:  SRSSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

Q9SEZ4 Transcription factor MYB1059.4e-0755.56Show/hide
Query:  SGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        S   S  RGH RPAE+ KL++ V  +GPQNWN IAE  +GRS  S
Subjt:  SGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

Arabidopsis top hitse value%identityAlignment
AT1G17950.1 myb domain protein 527.9e-0962.5Show/hide
Query:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        C RGH RPAE+ KLR+ V+QFGP NWN IA+   GRS  S
Subjt:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

AT1G26780.1 myb domain protein 1173.3e-0754.17Show/hide
Query:  SRSSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        S SS  +   RGH RPAE+ KL++ V  +GPQNWN IAE  +GRS  S
Subjt:  SRSSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

AT1G69560.1 myb domain protein 1056.7e-0855.56Show/hide
Query:  SGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        S   S  RGH RPAE+ KL++ V  +GPQNWN IAE  +GRS  S
Subjt:  SGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

AT1G73410.1 myb domain protein 543.3e-0757.5Show/hide
Query:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        C RGH RPAE+ KL+  V+Q+GP NWN IA    GRS  S
Subjt:  CYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS

AT4G33450.1 myb domain protein 696.0e-0958.54Show/hide
Query:  SCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS
        SC RGH RP E++ LRQ V+Q+GP+NWN+IA+   GRS  S
Subjt:  SCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGATCAAGAAGCAGCGGCGTGACCAGCTGCTACAGAGGCCACCGGCGGCCGGCGGAGAACAATAAACTCCGGCAATTCGTTCAACAGTTTGGGCCACAGAATTG
GAATTACATTGCAGAAGATTTCGAGGGCAGATCTGAAACCTCCTTCGTTAACAGCTCCGCCCGGCCACCGCCATCCCCGCCGCCCTGCGTGACGTCGTGGTTCTGCACGC
GATCTTCTTCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAGATCAAGAAGCAGCGGCGTGACCAGCTGCTACAGAGGCCACCGGCGGCCGGCGGAGAACAATAAACTCCGGCAATTCGTTCAACAGTTTGGGCCACAGAATTG
GAATTACATTGCAGAAGATTTCGAGGGCAGATCTGAAACCTCCTTCGTTAACAGCTCCGCCCGGCCACCGCCATCCCCGCCGCCCTGCGTGACGTCGTGGTTCTGCACGC
GATCTTCTTCTTCATGA
Protein sequenceShow/hide protein sequence
MMRSRSSGVTSCYRGHRRPAENNKLRQFVQQFGPQNWNYIAEDFEGRSETSFVNSSARPPPSPPPCVTSWFCTRSSSS