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Lag0034327 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034327
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSuccinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
Genome locationchr3:6343128..6344879
RNA-Seq ExpressionLag0034327
SyntenyLag0034327
Gene Ontology termsGO:0006099 - tricarboxylic acid cycle (biological process)
GO:0006104 - succinyl-CoA metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0042709 - succinate-CoA ligase complex (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0004775 - succinate-CoA ligase (ADP-forming) activity (molecular function)
GO:0004776 - succinate-CoA ligase (GDP-forming) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR005809 - Succinate--CoA synthetase, beta subunit
IPR013650 - ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 - ATP-grasp fold, subdomain 1
IPR036893 - SBP domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140571.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucumis sativus]6.8e-2690.14Show/hide
Query:  ASFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        ++ Q AFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE AGKMLGQILVTKQTGPQGKVVSK
Subjt:  ASFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

XP_022157524.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [Momordica charantia]3.1e-2694.12Show/hide
Query:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        +TAFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

XP_022157525.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X2 [Momordica charantia]3.1e-2694.12Show/hide
Query:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        +TAFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

XP_022959857.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita moschata]8.1e-2795.59Show/hide
Query:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QTAFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK
Subjt:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

XP_023005021.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita maxima]8.1e-2795.59Show/hide
Query:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QTAFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK
Subjt:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

TrEMBL top hitse value%identityAlignment
A0A0A0KA81 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial3.3e-2690.14Show/hide
Query:  ASFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        ++ Q AFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE AGKMLGQILVTKQTGPQGKVVSK
Subjt:  ASFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

A0A6J1DTC6 Succinate-CoA ligase subunit beta1.5e-2694.12Show/hide
Query:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        +TAFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

A0A6J1DWQ4 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.5e-2694.12Show/hide
Query:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        +TAFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

A0A6J1H5Q5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial3.9e-2795.59Show/hide
Query:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QTAFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK
Subjt:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

A0A6J1KTS5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial3.9e-2795.59Show/hide
Query:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QTAFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK
Subjt:  QTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

SwissProt top hitse value%identityAlignment
B2UMH5 Succinate--CoA ligase [ADP-forming] subunit beta1.5e-1559.46Show/hide
Query:  ELVIKSQILAGGRGLGTFKSGLKAGVHIVK-VDQVEEYAGKMLGQILVTKQTGPQGKVVSKEIFLIPQANRRKE
        + V+K+Q+ AGGRG GTFK+G K GVH+VK V++VEE AGKML Q+LVTKQTG  GK+VSK I +    + +KE
Subjt:  ELVIKSQILAGGRGLGTFKSGLKAGVHIVK-VDQVEEYAGKMLGQILVTKQTGPQGKVVSKEIFLIPQANRRKE

O82662 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.3e-2480Show/hide
Query:  SFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        + Q  FP+  ELV+KSQILAGGRGLGTFKSGLK GVHIVK D+ EE AGKMLGQ+LVTKQTGPQGKVVSK
Subjt:  SFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

Q55AI5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial7.6e-1249.35Show/hide
Query:  DAKELVIKSQILAGGRGLGTFKSGLKAGVHIV-KVDQVEEYAGKMLGQILVTKQTGPQGKVVSKEIFLIPQANRRKE
        + ++LV+K+Q+LAGGRG G F SGLK GV +    + V+++A KMLG  LVTKQTG  GKVV  ++++  +   RKE
Subjt:  DAKELVIKSQILAGGRGLGTFKSGLKAGVHIV-KVDQVEEYAGKMLGQILVTKQTGPQGKVVSKEIFLIPQANRRKE

Q6K9N6 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.3e-2272.86Show/hide
Query:  SFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        + +  FP  KE+V+KSQILAGGRGLGTFKSGL+ GVHIVK ++ E  A KMLGQILVTKQTGPQGK+VSK
Subjt:  SFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

Q84LB6 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.1e-2171.43Show/hide
Query:  SFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        + Q  FP+  E+V+KSQ+LAGGRGLGTFK+G + GVHIVK DQ E+ A KMLGQILVTKQTG QGKVVSK
Subjt:  SFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

Arabidopsis top hitse value%identityAlignment
AT1G76580.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein3.4e-0761.54Show/hide
Query:  CCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL
        C     FH L E DE KRSCR+RL+GHNRRRRK QP+++
Subjt:  CCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL

AT2G20420.1 ATP citrate lyase (ACL) family protein9.5e-2680Show/hide
Query:  SFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        + Q  FP+  ELV+KSQILAGGRGLGTFKSGLK GVHIVK D+ EE AGKMLGQ+LVTKQTGPQGKVVSK
Subjt:  SFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.1e-0869.23Show/hide
Query:  CCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL
        C     FH+L E DE KRSCRKRL+GHNRRRRKPQPE +
Subjt:  CCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL

AT5G50570.2 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.1e-0869.23Show/hide
Query:  CCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL
        C     FH+L E DE KRSCRKRL+GHNRRRRKPQPE +
Subjt:  CCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL

AT5G50670.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.1e-0869.23Show/hide
Query:  CCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL
        C     FH+L E DE KRSCRKRL+GHNRRRRKPQPE +
Subjt:  CCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATTCACACTCAAAAACCCATGTTGTGATGGTGAGGGGTTCCATTCGCTTGGTGAGCTTGATGAGGTGAAGAGGAGCTGTAGAAAAAGGCTTAATGGGCACAATCG
GCGTAGGAGGAAGCCTCAACCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTCTCAAAGCCTCAGCTTGAACTTTGCTTTTTGGCTGCTTCTTTCCAGACTGCTTTTC
CTGATGCGAAAGAGTTGGTCATTAAAAGTCAAATTTTAGCAGGTGGAAGAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTCACATTGTTAAGGTGGACCAG
GTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGGAGATCTTTTTGATTCCCCAAGCAAACAG
AAGGAAAGAGGGGTTGGAAGTTGACTTGGGGAATTGCTTGTTGTTTCGTACTCTGAAGATAACATCAGCCTACCCTTTTCCATACTATGTTGAAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGATTCACACTCAAAAACCCATGTTGTGATGGTGAGGGGTTCCATTCGCTTGGTGAGCTTGATGAGGTGAAGAGGAGCTGTAGAAAAAGGCTTAATGGGCACAATCG
GCGTAGGAGGAAGCCTCAACCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTCTCAAAGCCTCAGCTTGAACTTTGCTTTTTGGCTGCTTCTTTCCAGACTGCTTTTC
CTGATGCGAAAGAGTTGGTCATTAAAAGTCAAATTTTAGCAGGTGGAAGAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTCACATTGTTAAGGTGGACCAG
GTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGGAGATCTTTTTGATTCCCCAAGCAAACAG
AAGGAAAGAGGGGTTGGAAGTTGACTTGGGGAATTGCTTGTTGTTTCGTACTCTGAAGATAACATCAGCCTACCCTTTTCCATACTATGTTGAAATTTGA
Protein sequenceShow/hide protein sequence
MRFTLKNPCCDGEGFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSKPQLELCFLAASFQTAFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQ
VEEYAGKMLGQILVTKQTGPQGKVVSKEIFLIPQANRRKEGLEVDLGNCLLFRTLKITSAYPFPYYVEI