CuGenDBv2

Gene ID	Lag0034332
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribosomal protein
Genome location	chr3:6383119..6384664
RNA-Seq Expression	Lag0034332
Synteny	Lag0034332
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004150587.2 uncharacterized protein LOC101223220 [Cucumis sativus]

5.0e-42

87.25

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Query:  HSMKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKK
        ++MKVRSSVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFASEGPSPSL SR+EVKQEILPS S R GLASLIPQK++PTM  GWRM LASILLKK
Subjt:  HSMKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKK

Query:  HN
        HN
Subjt:  HN

XP_008443993.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo]

5.0e-42

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQEILPS   RMGLASLIPQK++PTML GWRM LASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

XP_022144930.1 uncharacterized protein LOC111014487 [Momordica charantia]

4.1e-44

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVRSSVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGPSP L SRSEVKQEILPS+SPR GLASLIPQKH+PT +FGWRM LASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]

3.8e-42

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVR+SVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSL SRSEVKQEILPSHS R GLASLIPQKH+PTMLFGWRM LASIL KK N
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

1.3e-42

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGP PSL SRSEVKQE+LPSHS R GLASLIPQKH+PTML GWRM LASILLKK N
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

2.4e-42

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQEILPS   RMGLASLIPQK++PTML GWRM LASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

A0A5A7U4L3 Ribosomal protein

2.4e-42

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQEILPS   RMGLASLIPQK++PTML GWRM LASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

A0A6J1CT08 Ribosomal protein

2.0e-44

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVRSSVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGPSP L SRSEVKQEILPS+SPR GLASLIPQKH+PT +FGWRM LASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

A0A6J1EZS5 Ribosomal protein

1.8e-42

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVR+SVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSL SRSEVKQEILPSHS R GLASLIPQKH+PTMLFGWRM LASIL KK N
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

A0A6J1JBN8 Ribosomal protein

2.4e-42

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLST ASEGPSP L   SEVKQEILPSHS R GLASL+PQKH+PTMLFGWRM LASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

6.8e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

6.8e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

5.2e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

P73300 50S ribosomal protein L36

4.0e-10

73.68

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR+SVKKMC+ CR ++RRGRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

5.2e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

3.3e-28

63.11

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLK
        MKVRSSVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS L +     QE+  LP      GLASL+ ++  PT  FGWR  LASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLK

Query:  KHN
        + N
Subjt:  KHN

AT5G20180.2 Ribosomal protein L36

3.3e-28

63.11

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLK
        MKVRSSVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS L +     QE+  LP      GLASL+ ++  PT  FGWR  LASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSPRMGLASLIPQKHQPTMLFGWRMDLASILLK

Query:  KHN
        + N
Subjt:  KHN

ATCG00760.1 ribosomal protein L36

1.3e-08

63.16

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MK+R+SV+K+CE CR ++RRGR+ + C SNP+HKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGGGATTTCAATTCGAGTACAGGAGGTCAGAGTTTTGCCTTGTAGATCCAGGATTTGGCCATTTTGTACTAGCATTTTCAGTGTATCACTCTATGAAAGTCCGTTCTTC
AGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGGGTATATATATACTGCTCATCGAATCCTAAACACAAGCAACGCCAAGGCCTATCAACATTTG
CAAGTGAAGGTCCTTCTCCTTCGTTGTTATCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCCCGCGAATGGGACTGGCTTCTCTTATCCCCCAAAAGCAT
CAGCCAACAATGTTGTTTGGCTGGAGAATGGATCTGGCTTCAATCCTGTTGAAGAAGCACAATTAG

mRNA sequence

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Protein sequence

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MGFQFEYRRSEFCLVDPGFGHFVLAFSVYHSMKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSPRMGLASLIPQKH
QPTMLFGWRMDLASILLKKHN

Lag0034332 (gene) of Sponge gourd (AG-4) v1 genome