; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0034395 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034395
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionChromo domain-containing protein
Genome locationchr3:6955032..6962503
RNA-Seq ExpressionLag0034395
SyntenyLag0034395
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEW16886.1 hypothetical protein [Tanacetum cinerariifolium]1.3e-2743.11Show/hide
Query:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY
        W +WLPWAE+ YNTSYHS ++T+PF+++YGR PP ++ Y    +   EVD+ L+ERD  L+ +R +   AQQ M+  A+ KR+ V L+VGD  YLKLRPY
Subjt:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY

Query:  RQGTLARHFNAKLAQALQGAREHSSSNSVSSNMSPDFVFKLEPELLGIRQSIDDATKLEVLIRWEDM
        RQ ++A+  N KLA    G  E         NM P+       E++G R  +D+  K  VLI W+ +
Subjt:  RQGTLARHFNAKLAQALQGAREHSSSNSVSSNMSPDFVFKLEPELLGIRQSIDDATKLEVLIRWEDM

KAA0032312.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.0e-2738.46Show/hide
Query:  CNSR---WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWA
        C+ R   WV WLPW E+ YNT+++  L TSPF+V+YGR PPS+L Y +  +  S +  QLKER  +L+ +RE+L    Q M+ YA++KR+HVE +VGDW 
Subjt:  CNSR---WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWA

Query:  YLKLRPYRQGTLARHFNAKLAQALQGAREHSS---SNSVSSNMSPDFVFKLEPELLGIRQSIDDATKLEVLIRW--EDMEWQ
         LK+RPYRQ +L +  N KL+    G  E  +   + +   ++  DF+      +  +++ + D T ++  +++  E++EWQ
Subjt:  YLKLRPYRQGTLARHFNAKLAQALQGAREHSS---SNSVSSNMSPDFVFKLEPELLGIRQSIDDATKLEVLIRW--EDMEWQ

KAD6119863.1 hypothetical protein E3N88_11134 [Mikania micrantha]2.3e-2738.67Show/hide
Query:  SRWVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLR
        ++W  +LPWAE+SYNT YH+   T+PF VVYGR PPS+LPYV+  +  +E++KQL +RD M+ ++R+ L  AQ  MR+ AN+KR+ +   VGD+ +LK++
Subjt:  SRWVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLR

Query:  PYRQGTLARHFNAKLAQALQGAR--EHSSSNSVSSNMSPDFVFKLEPELLGIRQSIDDATK--LEVLIRW-----EDMEWQ
        PYRQ TLA+    KL+    G    + +     +  ++ D+   L+P+ +   + + +A    LE+LI W     E+  W+
Subjt:  PYRQGTLARHFNAKLAQALQGAR--EHSSSNSVSSNMSPDFVFKLEPELLGIRQSIDDATK--LEVLIRW-----EDMEWQ

PON75651.1 Ribonuclease H-like domain containing protein, partial [Trema orientale]7.1e-2952.1Show/hide
Query:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY
        W  WLPWAE+ YNTS+H+ +KT+PF  +YGR PP +LPY    + VS +DKQL+ERD ML  ++ +L  AQQ M+T A++ R+ ++ +VGD  YLKLRPY
Subjt:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY

Query:  RQGTLARHFNAKLAQALQG
        RQ +LAR +N KL+    G
Subjt:  RQGTLARHFNAKLAQALQG

TYK05712.1 nucleolar complex protein 2-like protein [Cucumis melo var. makuwa]1.9e-2943.68Show/hide
Query:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY
        WV WLPWAE+ YNT+    L  SPF+ VYGR PPS+L Y   G+  S VD+QL+ERD  L+ +RE L  AQQ M+ YA+ KR+HVE +VGD  +LK+RPY
Subjt:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY

Query:  RQGTLARHFNAKLAQALQGAREHSSSNSVSSNMSP-------DFVFKLEPELLGIRQSIDDATKLEVLIRWEDM
        RQ TL R  N KL+    G  E        + + P       +F ++ +PE   +    + A   EVLI W+ +
Subjt:  RQGTLARHFNAKLAQALQGAREHSSSNSVSSNMSP-------DFVFKLEPELLGIRQSIDDATKLEVLIRWEDM

TrEMBL top hitse value%identityAlignment
A0A2P5DQU9 Ribonuclease H-like domain containing protein (Fragment)3.4e-2952.1Show/hide
Query:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY
        W  WLPWAE+ YNTS+H+ +KT+PF  +YGR PP +LPY    + VS +DKQL+ERD ML  ++ +L  AQQ M+T A++ R+ ++ +VGD  YLKLRPY
Subjt:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY

Query:  RQGTLARHFNAKLAQALQG
        RQ +LAR +N KL+    G
Subjt:  RQGTLARHFNAKLAQALQG

A0A5B6YMA8 Uncharacterized protein (Fragment)2.9e-2850.42Show/hide
Query:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY
        WV+WLPW E++YNTSYHS +KT+PFEVVYG+PPP++L Y+   + V  VDK L ERDA L ++R+RL  AQ  M+   ++  + VE  VG+W YL+L+PY
Subjt:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY

Query:  RQGTLARHFNAKLAQALQG
        RQ ++    N KL+    G
Subjt:  RQGTLARHFNAKLAQALQG

A0A5D3BJH1 Transposon Ty3-G Gag-Pol polyprotein5.0e-2838.46Show/hide
Query:  CNSR---WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWA
        C+ R   WV WLPW E+ YNT+++  L TSPF+V+YGR PPS+L Y +  +  S +  QLKER  +L+ +RE+L    Q M+ YA++KR+HVE +VGDW 
Subjt:  CNSR---WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWA

Query:  YLKLRPYRQGTLARHFNAKLAQALQGAREHSS---SNSVSSNMSPDFVFKLEPELLGIRQSIDDATKLEVLIRW--EDMEWQ
         LK+RPYRQ +L +  N KL+    G  E  +   + +   ++  DF+      +  +++ + D T ++  +++  E++EWQ
Subjt:  YLKLRPYRQGTLARHFNAKLAQALQGAREHSS---SNSVSSNMSPDFVFKLEPELLGIRQSIDDATKLEVLIRW--EDMEWQ

A0A5D3C3C0 Nucleolar complex protein 2-like protein9.1e-3043.68Show/hide
Query:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY
        WV WLPWAE+ YNT+    L  SPF+ VYGR PPS+L Y   G+  S VD+QL+ERD  L+ +RE L  AQQ M+ YA+ KR+HVE +VGD  +LK+RPY
Subjt:  WVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPY

Query:  RQGTLARHFNAKLAQALQGAREHSSSNSVSSNMSP-------DFVFKLEPELLGIRQSIDDATKLEVLIRWEDM
        RQ TL R  N KL+    G  E        + + P       +F ++ +PE   +    + A   EVLI W+ +
Subjt:  RQGTLARHFNAKLAQALQGAREHSSSNSVSSNMSP-------DFVFKLEPELLGIRQSIDDATKLEVLIRWEDM

A0A5N6PCV8 Reverse transcriptase domain-containing protein1.1e-2738.67Show/hide
Query:  SRWVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLR
        ++W  +LPWAE+SYNT YH+   T+PF VVYGR PPS+LPYV+  +  +E++KQL +RD M+ ++R+ L  AQ  MR+ AN+KR+ +   VGD+ +LK++
Subjt:  SRWVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLR

Query:  PYRQGTLARHFNAKLAQALQGAR--EHSSSNSVSSNMSPDFVFKLEPELLGIRQSIDDATK--LEVLIRW-----EDMEWQ
        PYRQ TLA+    KL+    G    + +     +  ++ D+   L+P+ +   + + +A    LE+LI W     E+  W+
Subjt:  PYRQGTLARHFNAKLAQALQGAR--EHSSSNSVSSNMSPDFVFKLEPELLGIRQSIDDATK--LEVLIRW-----EDMEWQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGTAACTCAAGATGGGTTCGATGGTTGCCTTGGGCGGAGTTTAGTTACAATACGTCTTACCATTCAGGTCTGAAGACAAGCCCTTTTGAGGTTGTTTACGGGCG
TCCTCCTCCATCAATCTTGCCGTATGTGAGTAATGGGTCTTGTGTTTCTGAAGTGGACAAACAACTCAAGGAGAGGGATGCGATGTTGTCGGTGATTAGAGAGAGGTTAG
CTTATGCACAACAGTACATGCGTACTTATGCGAATGAGAAGCGCAAACATGTGGAGTTGGATGTAGGGGATTGGGCTTACTTGAAACTTCGCCCATATAGACAAGGAACC
TTGGCCAGGCACTTTAATGCTAAACTCGCCCAAGCTTTGCAAGGCGCTCGGGAACACTCTTCCAGTAACTCCGTTTCCTCCAATATGTCTCCGGACTTCGTCTTCAAGTT
GGAGCCAGAGTTGTTAGGCATTCGGCAGTCCATTGATGATGCGACCAAGTTAGAGGTGTTGATCAGATGGGAAGACATGGAGTGGCAGAGGCCACATGGGAGGATGCAGT
GTGGGTCAATAACCAGTTCCCGAGCTTCCATCTTGAGGACAAATGGTTCTTTGGGGGCCGGGAAAATCTTTGTCCATGGACAAAGTGAAAGAGAGCAGTTGGTTGCTTGG
GTGAAGGAGGCATTGCCTTTCGTCATCTTTCAACTGCAAGCACTGGAGCTCTGTGCTAGATTTGGCTTTAGAGCTCATGGAAAATGCGTTGCAGAAAGTTTCAGCGGTCT
GGAGAGATATGAGAAAAGTTCTGTGTTTGCAGGACTAGTCGAGGACAACCTCAAGACTCTAATGGGAGTAATGAAGAGATCATGGAAGCAAAGGCATTTAGAATTCACTT
TCATGTGGCCGACGTATGTAAGGATTCACTTCCATTGGTGGATGATTTTGGAATTTGCTAGTTTTAAGACTAGTCGCAGGAAACCTCAAGATCTAAAGCAAGCAATTAAG
AGGACTAGTGGAGGAAAACCTCAAGACTCTAAGGGAGTAGTCGAGAGGTTACTAAAAGGAGGACTAGTCGAGGATAACCTCAAGACTCTAATGGGAGCAATGAAGAGGTT
TAGGACTAGTCGAGGGAAACCTCAAGATGTAAAGCGAGCAATGAAGAGGTTAGTAAAAGGAGGTTTGACTGTTATGGAATTTTCTAGTTTTGGACAATATTTGCTCGAGA
AAAGTTGGATTGTATTGGTCATCAAGTCGGATAAAGGGCAATATTCTGGATTTGTTGAGTCTTATGGATATTTTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATTGTAACTCAAGATGGGTTCGATGGTTGCCTTGGGCGGAGTTTAGTTACAATACGTCTTACCATTCAGGTCTGAAGACAAGCCCTTTTGAGGTTGTTTACGGGCG
TCCTCCTCCATCAATCTTGCCGTATGTGAGTAATGGGTCTTGTGTTTCTGAAGTGGACAAACAACTCAAGGAGAGGGATGCGATGTTGTCGGTGATTAGAGAGAGGTTAG
CTTATGCACAACAGTACATGCGTACTTATGCGAATGAGAAGCGCAAACATGTGGAGTTGGATGTAGGGGATTGGGCTTACTTGAAACTTCGCCCATATAGACAAGGAACC
TTGGCCAGGCACTTTAATGCTAAACTCGCCCAAGCTTTGCAAGGCGCTCGGGAACACTCTTCCAGTAACTCCGTTTCCTCCAATATGTCTCCGGACTTCGTCTTCAAGTT
GGAGCCAGAGTTGTTAGGCATTCGGCAGTCCATTGATGATGCGACCAAGTTAGAGGTGTTGATCAGATGGGAAGACATGGAGTGGCAGAGGCCACATGGGAGGATGCAGT
GTGGGTCAATAACCAGTTCCCGAGCTTCCATCTTGAGGACAAATGGTTCTTTGGGGGCCGGGAAAATCTTTGTCCATGGACAAAGTGAAAGAGAGCAGTTGGTTGCTTGG
GTGAAGGAGGCATTGCCTTTCGTCATCTTTCAACTGCAAGCACTGGAGCTCTGTGCTAGATTTGGCTTTAGAGCTCATGGAAAATGCGTTGCAGAAAGTTTCAGCGGTCT
GGAGAGATATGAGAAAAGTTCTGTGTTTGCAGGACTAGTCGAGGACAACCTCAAGACTCTAATGGGAGTAATGAAGAGATCATGGAAGCAAAGGCATTTAGAATTCACTT
TCATGTGGCCGACGTATGTAAGGATTCACTTCCATTGGTGGATGATTTTGGAATTTGCTAGTTTTAAGACTAGTCGCAGGAAACCTCAAGATCTAAAGCAAGCAATTAAG
AGGACTAGTGGAGGAAAACCTCAAGACTCTAAGGGAGTAGTCGAGAGGTTACTAAAAGGAGGACTAGTCGAGGATAACCTCAAGACTCTAATGGGAGCAATGAAGAGGTT
TAGGACTAGTCGAGGGAAACCTCAAGATGTAAAGCGAGCAATGAAGAGGTTAGTAAAAGGAGGTTTGACTGTTATGGAATTTTCTAGTTTTGGACAATATTTGCTCGAGA
AAAGTTGGATTGTATTGGTCATCAAGTCGGATAAAGGGCAATATTCTGGATTTGTTGAGTCTTATGGATATTTTAGATGA
Protein sequenceShow/hide protein sequence
MHCNSRWVRWLPWAEFSYNTSYHSGLKTSPFEVVYGRPPPSILPYVSNGSCVSEVDKQLKERDAMLSVIRERLAYAQQYMRTYANEKRKHVELDVGDWAYLKLRPYRQGT
LARHFNAKLAQALQGAREHSSSNSVSSNMSPDFVFKLEPELLGIRQSIDDATKLEVLIRWEDMEWQRPHGRMQCGSITSSRASILRTNGSLGAGKIFVHGQSEREQLVAW
VKEALPFVIFQLQALELCARFGFRAHGKCVAESFSGLERYEKSSVFAGLVEDNLKTLMGVMKRSWKQRHLEFTFMWPTYVRIHFHWWMILEFASFKTSRRKPQDLKQAIK
RTSGGKPQDSKGVVERLLKGGLVEDNLKTLMGAMKRFRTSRGKPQDVKRAMKRLVKGGLTVMEFSSFGQYLLEKSWIVLVIKSDKGQYSGFVESYGYFR