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Lag0034491 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0034491
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationchr3:7818981..7820431
RNA-Seq ExpressionLag0034491
SyntenyLag0034491
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146462.1 probable RNA-dependent RNA polymerase 1 [Momordica charantia]3.9e-1254.05Show/hide
Query:  GESKSKSQRSEEGDEGGGGGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        G S  K++ ++  +  GG GVER+EN+ +HLG+QISKE++SVIW+GE+C VEFG G+RKL+ Y++   +EYKME
Subjt:  GESKSKSQRSEEGDEGGGGGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

XP_023524039.1 probable RNA-dependent RNA polymerase 1 isoform X1 [Cucurbita pepo subsp. pepo]1.6e-1062.96Show/hide
Query:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        VER+E VR+ LG+ + KE M VIWRGE+  VE+G G+RKLWFYLSY  ++YKME
Subjt:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

XP_023524048.1 probable RNA-dependent RNA polymerase 1 isoform X2 [Cucurbita pepo subsp. pepo]1.6e-1062.96Show/hide
Query:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        VER+E VR+ LG+ + KE M VIWRGE+  VE+G G+RKLWFYLSY  ++YKME
Subjt:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

XP_023549735.1 probable RNA-dependent RNA polymerase 1 [Cucurbita pepo subsp. pepo]3.3e-1166.07Show/hide
Query:  GGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        G +ER+ENV +  GN +SKE M VIW+GE   VE+GIG+RKL FYLSYE VEYKME
Subjt:  GGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

XP_038875555.1 probable RNA-dependent RNA polymerase 1 [Benincasa hispida]1.2e-1058.67Show/hide
Query:  GESKSKSQRSEEGDEG-GGGGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        G S  K++  E      GGG +ER+E+V+ HLG+ ISK++M VIW GE+  VEFGIG+RKL FYLSYE VEYKME
Subjt:  GESKSKSQRSEEGDEG-GGGGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

TrEMBL top hitse value%identityAlignment
A0A0A0KRH3 RNA-dependent RNA polymerase3.0e-1064.81Show/hide
Query:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        +ER+E+V+ HLG+ IS  +M VIW GE   VEFG G RKLWFYLSYE  EYKME
Subjt:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

A0A0S1YCZ4 RNA-dependent RNA polymerase3.0e-1064.81Show/hide
Query:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        +ER+E+V+ HLG+ IS  +M VIW GE   VEFG G RKLWFYLSYE  EYKME
Subjt:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

A0A6J1CZM7 RNA-dependent RNA polymerase1.9e-1254.05Show/hide
Query:  GESKSKSQRSEEGDEGGGGGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        G S  K++ ++  +  GG GVER+EN+ +HLG+QISKE++SVIW+GE+C VEFG G+RKL+ Y++   +EYKME
Subjt:  GESKSKSQRSEEGDEGGGGGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

A0A6J1JTB1 RNA-dependent RNA polymerase3.0e-1066.07Show/hide
Query:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSY--EFVEYKME
        VER+E VR+ LG+ ISKE M VIWRGE+  VE+G G+RKLWFYLSY  E  +YKME
Subjt:  VERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSY--EFVEYKME

E5GB63 RNA-dependent RNA polymerase1.0e-1055.07Show/hide
Query:  KSQRSEEGDEGGGGGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        K++  E+    GG  +ER+E+V+  LG+ ISK++M VIW GE   VEFG G+RKLWFYLSYE  +YKME
Subjt:  KSQRSEEGDEGGGGGVERIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

SwissProt top hitse value%identityAlignment
Q9LQV2 RNA-dependent RNA polymerase 11.8e-0437.25Show/hide
Query:  IENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        I  +++  G Q+S ++   +W  +D CV FGIG+RKL F  S+   +Y++E
Subjt:  IENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME

Arabidopsis top hitse value%identityAlignment
AT1G14790.1 RNA-dependent RNA polymerase 11.3e-0537.25Show/hide
Query:  IENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME
        I  +++  G Q+S ++   +W  +D CV FGIG+RKL F  S+   +Y++E
Subjt:  IENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACAAGGAGAAGGATCTCACTAAACTATCTTTTGTTGAGGATCCCACATCGGAAAGATTGGTGGAGACCTCCCAATATATAAGCTACAAGGGTCACTCCACTCA
TTGCCATTTGGTTTTGAGATGTAATGTTTTGGACATTGGTAGAGATAACCAAAAAAGTGTAGGTTCCTGTTCCACAGATTCAGCATCAGTGATCAAGATGTTGAACATTG
AAAAAGTTGAGTTGACTGAATTTGTGAATATGGTGGTGGGCATCAAGGATTTGGTGCAAAATCTCTTTATAATCTCTTGCTCCAAAATCCCTCGTTCGGGCAATGAGCGA
CATTACACGAGAAGAAGGCAATCGGAAGCCGAGGGTGGGGAGTTGGATGATCTCGGTGAGGTCGTCGTCGACGTGGGAGTGGTGGTCGTCGAGGTCGAGGTTGTGCATGT
GGGCGGCCTTGGCGGCGGCGGCTTGGACGTCGCGAGGGGCGAGGGAGACGGGGCGAGGGAGGAGGTGGAGGAGGTCGGGGAAATTGAGGGTGGCGGAGGAGCCTTTGATG
CTGAAGGTGGCGACGTCGTGGGCACGGGCGGCCATTTCCGGGGTGGGGAAAGTAAATCTAAAAGCCAGAGGAGCGAAGAGGGAGATGAGGGCGGCGGCGGCGGCGTGGAG
AGAATCGAAAACGTGAGGATTCACTTGGGAAATCAGATTTCGAAGGAGAGAATGAGCGTGATTTGGAGAGGAGAAGATTGTTGTGTGGAATTTGGAATTGGAATCAGGAA
ATTGTGGTTTTATTTGAGTTATGAGTTTGTTGAGTATAAAATGGAGGGTTTCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAACAAGGAGAAGGATCTCACTAAACTATCTTTTGTTGAGGATCCCACATCGGAAAGATTGGTGGAGACCTCCCAATATATAAGCTACAAGGGTCACTCCACTCA
TTGCCATTTGGTTTTGAGATGTAATGTTTTGGACATTGGTAGAGATAACCAAAAAAGTGTAGGTTCCTGTTCCACAGATTCAGCATCAGTGATCAAGATGTTGAACATTG
AAAAAGTTGAGTTGACTGAATTTGTGAATATGGTGGTGGGCATCAAGGATTTGGTGCAAAATCTCTTTATAATCTCTTGCTCCAAAATCCCTCGTTCGGGCAATGAGCGA
CATTACACGAGAAGAAGGCAATCGGAAGCCGAGGGTGGGGAGTTGGATGATCTCGGTGAGGTCGTCGTCGACGTGGGAGTGGTGGTCGTCGAGGTCGAGGTTGTGCATGT
GGGCGGCCTTGGCGGCGGCGGCTTGGACGTCGCGAGGGGCGAGGGAGACGGGGCGAGGGAGGAGGTGGAGGAGGTCGGGGAAATTGAGGGTGGCGGAGGAGCCTTTGATG
CTGAAGGTGGCGACGTCGTGGGCACGGGCGGCCATTTCCGGGGTGGGGAAAGTAAATCTAAAAGCCAGAGGAGCGAAGAGGGAGATGAGGGCGGCGGCGGCGGCGTGGAG
AGAATCGAAAACGTGAGGATTCACTTGGGAAATCAGATTTCGAAGGAGAGAATGAGCGTGATTTGGAGAGGAGAAGATTGTTGTGTGGAATTTGGAATTGGAATCAGGAA
ATTGTGGTTTTATTTGAGTTATGAGTTTGTTGAGTATAAAATGGAGGGTTTCCTTTGA
Protein sequenceShow/hide protein sequence
MNNKEKDLTKLSFVEDPTSERLVETSQYISYKGHSTHCHLVLRCNVLDIGRDNQKSVGSCSTDSASVIKMLNIEKVELTEFVNMVVGIKDLVQNLFIISCSKIPRSGNER
HYTRRRQSEAEGGELDDLGEVVVDVGVVVVEVEVVHVGGLGGGGLDVARGEGDGAREEVEEVGEIEGGGGAFDAEGGDVVGTGGHFRGGESKSKSQRSEEGDEGGGGGVE
RIENVRIHLGNQISKERMSVIWRGEDCCVEFGIGIRKLWFYLSYEFVEYKMEGFL